BAC Information

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BAC

Clone NameMSMg01-125M19
Chromosome18 (Build37)
Map Location 87,523,983 - 87,524,228
singlet/doubletsinglet
Overlap genenone
Upstream geneNeto1, Cbln2, LOC100039872, LOC100039881, LOC665437, LOC435580, LOC546719, LOC383318
Downstream genePpia-ps18_1039.1, LOC329008, LOC100039961, LOC100039972
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-125M19.T7 (MSMg01no125_m19.b1)MSMg01-125M19.TJ (MSMg01no125_m19.g1)
ACCAG334793AG334794
length700727
length of high quality
(start - end)
246 (62 - 307)289 (88 - 376)
definitionCHROMAT_FILE: MSMg01no125_m19.b1 PHD_FILE: MSMg01no125_m19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:57 2005CHROMAT_FILE: MSMg01no125_m19.g1 PHD_FILE: MSMg01no125_m19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGCTATACGACTCACTATTTCGAGACGATCCGCGGAATTCTCTTATTTC
TCTGACACTCCCTGTGTCACACATCACAATCAATCTTACACTTACTTTTG
TACATTTTTCCCTCATCTCACCTAGATTGCTGTCTGTAGGAGGGCAGCCT
TTGAATTTTTCATCATTTTCTTCTCTGGTCCTTAGGCAGAGCACTTTGAC
CAGTGGATTCTTAAACAGTTCAGGTTGAATAAATGCATGATAAGGAAGAA
TTGAATAGATGAGAGGATTTGCTCTTGAAACACTGAGTGTTTGAAGAATA
TGGGAAGTTTTTTTCAAAGTCTTTAAAGTTGCATGCGATTTGATATGCCT
TACCCTTCCTTNACCCGTCACAGAGATCAAATACTTAATTCCATATGTCN
NGGAAACTATAAAATAAAAAAATTCTGAGCGTAGGTTTGAAACACTGAAG
CACCATATCCTAACTAGTGAGTGGGATTATGTTTAAATCCATTACTTTTT
TTAAAAGAAAAAATATAATGTATAGCAAGGCAGAGGAAGTGTCATGGTAG
ACTTCATACTCTTCACGTCATATCTTAGTGAGCGTCTTATGATTATAAAT
GTGTAATATGATCATAATGATTTTATTTTTGCTACATTTTTATTAACTAA
GCACAAATTAAATGGTCTGGCTTTATATAAGGGATAGATAAGGGTAAAAA

CTCCCTTTCATACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATAC
CGAATGGCAGAGAAGCACTTAAAAAAATGTTCAACATCCTTAATCATCAG
GGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAA
TGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGA
GAAAGAGGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACC
ACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTAC
CGGAGGATCCAGCAATACCTCTCCTGGGTATATATCCAGAAGATGCCCCA
ACAGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTAT
AATAGCCAGAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGA
TACAGAAAATGTGGTACATCTACCCCATGGAGTACTACTCCGCTATTAAA
AAGAATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCAT
CCTCCTGAGTGAGGTAACACATTCCCAAAGAAACTCACACCATATGTATT
CCCTGATAAGCGGATATTAGCCCCCAACCTAGGATACCCCAGACCTAACA
TATAATTTGCTCAACCCATGCACACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no125_m19.b1 MSMg01no125_m19.b1 CHROMAT_FILE:
MSMg01no125_m19.b1 PHD_FILE: MSMg01no125_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:57 2005
         (246 letters)



>mm_chr18_87523783_87524428
          Length = 646

 Score =  460 bits (238), Expect = e-134
 Identities = 244/246 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgtgtcacacatcacaatcaatcttacacttacttttgtacatttttccctcatctcac 60
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 446 ctgtgtcacacatcacaatcaatcttacacttacttttgtacatttttcaatcatctcac 387

                                                                       
Query: 61  ctagattgctgtctgtaggagggcagcctttgaatttttcatcattttcttctctggtcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ctagattgctgtctgtaggagggcagcctttgaatttttcatcattttcttctctggtcc 327

                                                                       
Query: 121 ttaggcagagcactttgaccagtggattcttaaacagttcaggttgaataaatgcatgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ttaggcagagcactttgaccagtggattcttaaacagttcaggttgaataaatgcatgat 267

                                                                       
Query: 181 aaggaagaattgaatagatgagaggatttgctcttgaaacactgagtgtttgaagaatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aaggaagaattgaatagatgagaggatttgctcttgaaacactgagtgtttgaagaatat 207

                 
Query: 241 gggaag 246
           ||||||
Sbjct: 206 gggaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)