Query= MSMg01no126_f06.b1 MSMg01no126_f06.b1 CHROMAT_FILE:
MSMg01no126_f06.b1 PHD_FILE: MSMg01no126_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:40 2005
(299 letters)
>mm_chr18_42870456_42871154
Length = 699
Score = 526 bits (272), Expect = e-154
Identities = 278/280 (99%)
Strand = Plus / Plus
Query: 5 gaattcttagtcttgtccaccctggcctaaggccctggttattgagaggctgagagatag 64
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttagtcttgttcagcctggcctaaggccctggttattgagaggctgagagatag 264
Query: 65 tggttacccacaagcctggtcaataaaataagaccacatgcataaggaacatggctcagc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tggttacccacaagcctggtcaataaaataagaccacatgcataaggaacatggctcagc 324
Query: 125 agcaaaagatccttgccaccacggtggaggatctgtgtgatccttaatctctccatggtg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agcaaaagatccttgccaccacggtggaggatctgtgtgatccttaatctctccatggtg 384
Query: 185 gcatggaaggagagagaagggagtaattaaagctgtcttcagacttccacatgtgttcct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcatggaaggagagagaagggagtaattaaagctgtcttcagacttccacatgtgttcct 444
Query: 245 gcaggtgtgtgaacacacacacacacacacacacacacac 284
||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcaggtgtgtgaacacacacacacacacacacacacacac 484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 699
Length adjustment: 9
Effective length of query: 290
Effective length of database: 690
Effective search space: 200100
Effective search space used: 200100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no126_f06.g1 MSMg01no126_f06.g1 CHROMAT_FILE:
MSMg01no126_f06.g1 PHD_FILE: MSMg01no126_f06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:40 2005
(636 letters)
>mm_chr18_43006396_43007434
Length = 1039
Score = 992 bits (513), Expect = 0.0
Identities = 530/537 (98%), Gaps = 3/537 (0%)
Strand = Plus / Minus
Query: 103 aagagtttttaaaagttgtgtcctcctatccttaacaatgtttctagccttgggatgagt 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 aagagtttttaaaagttgtgtcctcctatccttaacaatgtttctagccttgggatgagt 780
Query: 163 tagcctctgtaggatgcagaggagatcagcctccatcatggggtggactccagggtatct 222
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 tagcctctgtagaatgcagaggagatcagcctccatcatggggtggactccagggtatct 720
Query: 223 acaagaccaacaaactctagaggcttccagcagtgaaagggtttattcagacaatgattc 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 acaagaccaacaaactctagaggcttccagcagtgaaagggtttattcagacaatgattc 660
Query: 283 ttccaaaccacatttgggggacaatgccttcagacataatattcactcctcagttagcaa 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 ttccaaaccacatttgggggacaatgccttcagacataatattcactcctcagttagcaa 600
Query: 343 aaatcacactcaaatttatctgacatgcctgggctcctgaaggtattcactatccttagt 402
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 aaatcacacttaaatttatctgacatgcctgggctcctgaaggtattcactatccttagt 540
Query: 403 aaatactctatagattctctagttctgtgaatattcattcattctgatgcttaccaagaa 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 aaatactctatagattctctagttctgtgaatattcattcattctgatgcttaccaagaa 480
Query: 463 ggtacatatgttcaggcattgtgtaaggtctgagaaatagctagaaacttgaagatgaca 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ggtacatatgttcaggcattgtgtaaggtctgagaaatagctagaaacttgaagatgaca 420
Query: 523 tctcaatcatt---aaaaaaaaaaagctcacagtggaaaagatacacagaataaatgatt 579
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tctcaatcattaaaaaaaaaaaaaagctcacagtggaaaagatacacagaataaatgatt 360
Query: 580 gggagtagggaacatggatgatccagtcaatgccaaaaggagttaatatacccagag 636
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 359 gggagtagggaacatggatgatccagtcaatgccaaaaggagtcaatattcccagag 303
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1039
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1029
Effective search space: 644154
Effective search space used: 644154
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
