BAC Information

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BAC

Clone NameMSMg01-126O08
Chromosome18 (Build37)
Map Location 8,334,822 - 8,335,243
singlet/doubletsinglet
Overlap genenone
Upstream geneMpp7, EG622384, LOC100039562, LOC100039606, Wac, LOC665121, LOC225134, LOC665132
Downstream geneEG433158, EG545242, LOC665161, Fzd8, 9430022F06Rik, Ccny
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126O08.T7 (MSMg01no126_o08.b1)MSMg01-126O08.TJ (MSMg01no126_o08.g1)
ACCAG335585AG335586
length697685
length of high quality
(start - end)
318 (45 - 362)423 (77 - 499)
definitionCHROMAT_FILE: MSMg01no126_o08.b1 PHD_FILE: MSMg01no126_o08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:27 2005CHROMAT_FILE: MSMg01no126_o08.g1 PHD_FILE: MSMg01no126_o08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTCACCTCTGTACCCCATTTTTCAAATTTAGTTTTATTTGTT
ATTCATTTTTTACACTTCATATTCCATTCCCTGTCCCTCCCCTCCCACCC
TCCAACTGCTCCAAATCCCACACCTCCTCCTCACCTCATCCCATCTCCAC
ATGTATGCCCCCACCCTTCTCCCCATCTGACCTCTAAACTCCCTGGGGCC
TCCAGTCTCTTGAGGGTTAGGTGTATCATCTTTGAATGATCATTGACCTG
GACATCCTCTACTGTATGTGTTTTGGGGGGTCTCATATCAGCTGATGTAT
GATGTCTGTTTGCTGTTCCAGCGTTAGAAAGATCTTGGGTTTCCAGATTA
TTTAAGATTGCCCCTCCTCTTGTAGGATCGACCTTCTCCTCAGCTTCTTT
CAGCCTTCCTTAATTCAATAATAGGGCTCAGCTGCTTCTTTCCATTGCCT
GCATGCACATATCTGCATCTGACTCTTTCAGTTGCTTGTTGAGTCTTTCA
GAGGGCAGTCATGATAGGTCCCTTTTTGTGAGCACTCCACAGTTTCCGCA
ATATTGCCAGGCCTACAAAGATATTTGTATCTCTGCAATCTCACTTCCTG
ACTTACCTGTACACATTGTATATCAACCTATCTATCCCACTTACATC
CCTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGCTTTCCATCACTTCATGAGAAC
TCCCTCTTGTGTTCTGATTTTTCTTATAATGTTTGTGATATTTTTTTGTT
TATCATTTGTTTTCATTTCTGTTTATCTCCCCACACACACACGCACACAA
AAAATAGCCCTGAAGAAAACGTCAACTCTCCTGCAAATCTTAGGACATGA
GCAACTTTGTTAACTGTGTGTGTCAAGGACTAGCTGGAAGGCTACTGAGG
TGACATACAGAATTTGCAATGCTATGGGTTTAATTAAGTGACAGAGTAAA
TTGACCACAGCCACCAGGAAATGTTTTAATCCAGACTATTGGAGTGGAAA
TTTTACTTTGATTTCCCACACAGCTAGAAGCTGAAATGTTTCACTATTAG
ATCTGACAAGAGAAATTTACTCTTACATCCCCTGATGGAGCTTGTGGTAG
ACACAGGTCAAGGTGCATATGATCAGAGGTTATAAAACTTATCTTCATTA
TGCTCCAGCCATGCATCTACCCCATTATAGAACAGCTCCATCCATCCATT
CATCCATCCATCCATCCATCCATCCATCCCTCCATCTGGGTTGTCATTCT
GACCATAAATGTTATGCAATATTTTGAGACTAACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_o08.g1 MSMg01no126_o08.g1 CHROMAT_FILE:
MSMg01no126_o08.g1 PHD_FILE: MSMg01no126_o08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:27 2005
         (423 letters)



>mm_chr18_8334622_8335445
          Length = 824

 Score =  733 bits (379), Expect = 0.0
 Identities = 411/427 (96%), Gaps = 11/427 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgctttccatcacttcatgagaactccctcttgtgttctgatttttcttataatgtttgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tgctttccatcacttcatgagaactccctcttgtgttctgatttttcttataatgtttgt 563

                                                                       
Query: 61  gatatttttttgtttatcatttgttttcatttctgtttatct------ccccacacacac 114
           ||||||||||||||||||||||||||||||||||||||||||      ||||||||||||
Sbjct: 562 gatatttttttgtttatcatttgttttcatttctgtttatctccccccccccacacacac 503

                                                                       
Query: 115 acgcacacaaaaaatagccctgaagaaaacgtcaactctcctgcaaatcttaggacatga 174
           |  |||||   |||||||||||||||  ||||||||||||||||||||||||||||||||
Sbjct: 502 a--cacac---aaatagccctgaagattacgtcaactctcctgcaaatcttaggacatga 448

                                                                       
Query: 175 gcaactttgttaactgtgtgtgtcaaggactagctggaaggctactgaggtgacatacag 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gcaactttgttaactgtgtgtgtcaaggactagctggaaggctactgaggtgacatacag 388

                                                                       
Query: 235 aatttgcaatgctatgggtttaattaagtgacagagtaaattgaccacagccaccaggaa 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aatttgcaatgctatgggtttaattaagtgacagagtaaattgaccacagccaccaggaa 328

                                                                       
Query: 295 atgttttaatccagactattggagtggaaattttactttgatttcccacacagctagaag 354
           |||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||
Sbjct: 327 atgttttaatccagactattggagtggaaattttactttgatttcccagaaagttagaag 268

                                                                       
Query: 355 ctgaaatgtttcactattagatctgacaagagaaatttactcttacatcccctgatggag 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ctgaaatgtttcactattagatctgacaagagaaatttactcttacatcccctgatggag 208

                  
Query: 415 cttgtgg 421
           |||||||
Sbjct: 207 cttgtgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 824
Length adjustment: 9
Effective length of query: 414
Effective length of database: 815
Effective search space:   337410
Effective search space used:   337410
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)