Query= MSMg01no127_a04.b1 MSMg01no127_a04.b1 CHROMAT_FILE:
MSMg01no127_a04.b1 PHD_FILE: MSMg01no127_a04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:37 2005
(612 letters)
>mm_chr18_23970787_23971798
Length = 1012
Score = 1054 bits (545), Expect = 0.0
Identities = 568/581 (97%), Gaps = 9/581 (1%)
Strand = Plus / Minus
Query: 41 taaagagcatctgctgtgtgtcatgtattgtgccagctatttagggcacaaagatcacag 100
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1012 taaagagcatctgctgtgtgtcatgtattgtgccaggtatttagggcacaaagatcacag 953
Query: 101 actgtaaaggcaggtaaaaagtcgcagactcaaactagtaactagcattctctccaggac 160
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 952 actgtaaagacaggtaaaaagtcgcagactcaaactagtaactagcattctctccaggac 893
Query: 161 tgactttgccccaggcaactgcagggttctttatattcctagcattcagtcccacatgac 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 tgactttgccccaggcaactgcagggttctttatattcctagcattcagtcccacatgac 833
Query: 221 aaccctgtgag---------gttagctccctgggtatggaggaaaatgatgcttaaagag 271
||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 aaccctgtgaggttggtgctgttagctccctgggtatggaggaaaatgatgcttaaagag 773
Query: 272 gcagatggcatttgtcctgagtgaggctgtgacagagactgtcttatgccagagccccaa 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 gcagatggcatttgtcctgagtgaggctgtgacagagactgtcttatgccagagccccaa 713
Query: 332 gtggcttgctggctgggcattctgagcatctcatcagaccacaatatttggaaggaagga 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 gtggcttgctggctgggcattctgagcatctcatcagaccacaatatttggaaggaagga 653
Query: 392 cgtgccaaacctggacagaaactgcacaggaactaaggaagtagaagcagtcagtgttgc 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 cgtgccaaacctggacagaaactgcacaggaactaaggaagtagaagcagtcagtgttgc 593
Query: 452 ttgtgggacatcttaaagtcactgccacgtgcctttcaaaaattccagggcaagaaaatc 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 ttgtgggacatcttaaagtcactgccacgtgcctttcaaaaattccagggcaagaaaatc 533
Query: 512 agttccccaaatatagacacttgtggatttatcctgagttccaggccctcatatgagaac 571
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 532 agttccccaaatacagacacttgtggatttatcctgagttctaggccctcatatgagaac 473
Query: 572 tcagggaggcccacttggtctacctggcctggggccatgcc 612
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 tcagggaggcccacttggtctacctggcctggggccatgcc 432
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space: 603204
Effective search space used: 603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no127_a04.g1 MSMg01no127_a04.g1 CHROMAT_FILE:
MSMg01no127_a04.g1 PHD_FILE: MSMg01no127_a04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:37 2005
(349 letters)
>mm_chr18_23810069_23810819
Length = 751
Score = 617 bits (319), Expect = 0.0
Identities = 341/349 (97%), Gaps = 3/349 (0%)
Strand = Plus / Plus
Query: 1 tcggtccacgcatcccagacaacaatgttttaaatgcctcttgtagctgtctgttcttcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcggtccacgcatcccagacaacaatgttttaaatgcctcttgtagctgtctgttcttcc 260
Query: 61 aaattcccacctggaaagtgaaaggggactttgtgacattggcagaatcatggcgcctac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaattcccacctggaaagtgaaaggggactttgtgacattggcagaatcatggcgcctac 320
Query: 121 caatccaaacacttcaggactgtgaggaaagaatctttttttttttt--ctctctgaagt 178
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 321 caatccaaacacttcaggactgtgagaaaagaatcttttttttttttttctctctgaagt 380
Query: 179 taaaatacaggggcctggggatattgtgcagtggctagagcacttgcagagaaagtgtag 238
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct: 381 taaaatacaggggcctggggatattgtccagtggttagagcacttgcagagaaagtgtag 440
Query: 239 actggagtttgggtccccagaatccatttaaatgtcagaaaggcatggcagccccgcc-g 297
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 441 actggagcttgggtccccagaatccacttaaatgtcagaaaggcatggcagccccgcccg 500
Query: 298 ctttaatccaagcaatcagctaagaagtcactgaacatagcaattgcaa 346
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctttaatccaagcaatcagctaagaagtcactgaacatagcaattgcaa 549
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 751
Length adjustment: 9
Effective length of query: 340
Effective length of database: 742
Effective search space: 252280
Effective search space used: 252280
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
