BAC Information

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BAC

Clone NameMSMg01-127E11
Chromosome18 (Build37)
Map Location 85,014,243 - 85,014,647
singlet/doubletsinglet
Overlap genenone
Upstream geneTshz1, Zadh2, LOC669856, Zfp407, Cndp1, EG640234, Cndp2, LOC100039711, LOC100039725, B230399E16Rik
Downstream geneCyb5, Fbxo15, 1700034H14Rik, LOC100039765, LOC665382
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-127E11.T7 (MSMg01no127_e11.b1)MSMg01-127E11.TJ (MSMg01no127_e11.g1)
ACCAG335866AG335867
length714708
length of high quality
(start - end)
494 (43 - 536)405 (69 - 473)
definitionCHROMAT_FILE: MSMg01no127_e11.b1 PHD_FILE: MSMg01no127_e11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:58 2005CHROMAT_FILE: MSMg01no127_e11.g1 PHD_FILE: MSMg01no127_e11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAAGGCCCACACTTAAACATGATAAAAGCAATCTACAGCAAACCAGTAG
GCAACATCAAAATAAATGGTGAGAAGCTTGAAGCAATCCCACTAAAATCA
GGGACTAGACAAGGCTGTCCACTCTCTCCCTACCTATTCAACATTGTACT
TGAAGTCCTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATAC
AAATTGGAAAGGAAGCAGTCAAAAAAATCACTTTCTGCAGATGATATGAT
AGTATATATAAGTGATCCTAAAAATTCCACCAGAGACCTCCTAAACCTGA
TAAACAGCTTCAGTAACGTAGCTGGATATAAAATTAAATCAAATAAGTCA
ATGGCCTCCCCCCACACAAAGGATAAACAGGCTGAGAGAGAAATTAGGGA
AACAACACCCTTCTTAGTAGTCACAAATAATATAAAATAACTTGGCGAGA
CTCTAATTAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAGTCTCTG
AACAAAAAAATTAAAGATGATCTCAGAAGATGGAAAGATCTCCCATGCTC
ATGTATTTGCAGGGAAAATACATAAAAATAGCTGTCTTGCCAAAAGTTTT
CTACAGACTCATTGCCATCTCCATCAAAATTTCAACTCACTTCTTCAATG
ACTTATAAATGCCC
GATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAACAGAGGATGTAGCTACAGATCCTACATTAT
TAAGAAGGATTATCACGAGACTAACATGATCGGGTTCACACACATAGATT
GAGCACACAATTGAAAAGTTCCAAATGGGGCTTGGATGATGGCTGTGGTG
GATTGAATATATTTGGCCCAGGGAGTAGCACTATTTGGAGGTGTGGCCTT
GTTGGAGGAAATATGTCACTGTGGGTGTGGGCTTTAAGACCCTTAACCTA
GCTTCCTGGAATCCAGTCTTCTCCTAGTGGCCTTCAGATAAAGATGTAGA
ACTCTCAGCCCCTCCTGCACAATTATCTGCCTGGAATGAACCTCTGAATG
TGTCCCCCCCCGCCAAGTAAATGTTGTCCTTATAAGAGTTGCCTTGGTCA
TGGTCTCTGTTCATAGCAGTAAAAACCTAACTCAGACTATGGCCAAGTGG
GCAAAGCACTTGCAGCACAACCCTGAGGACCCCAGAATTCAGAGCCCCAG
AATCCATGTAAAGCCTCATCATTTGTAAATGATGCATGCCTATCATCCCT
GTGCCACTATAAGGAGGTGTGCCACGTACACAGCCATCCTGGAGTTCTCA
GGCCCCAGAAAGGCCGTCTGGATAACAAAGAGGAAACTGTCGGTTTCCTG
CCTGAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no127_e11.g1 MSMg01no127_e11.g1 CHROMAT_FILE:
MSMg01no127_e11.g1 PHD_FILE: MSMg01no127_e11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:58 2005
         (405 letters)



>mm_chr18_85014043_85014847
          Length = 805

 Score =  714 bits (369), Expect = 0.0
 Identities = 396/411 (96%), Gaps = 12/411 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacagaggatgtagctacagatcctacattattaagaaggattatcacgagactaacatg 60
           ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 201 aacagaggatgtagctacagatcctacattattaagaaggattattaagagactaacatg 260

                                                                       
Query: 61  atcgggttcacacacatagattgagcacacaattgaaaagttccaaatggggcttggatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcgggttcacacacatagattgagcacacaattgaaaagttccaaatggggcttggatg 320

                                                                       
Query: 121 atggctgtggtggattgaatatatttggcccagggagtagcactatttggaggtgtggcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atggctgtggtggattgaatatatttggcccagggagtagcactatttggaggtgtggcc 380

                                                                       
Query: 181 ttgttggaggaaatatgtcactgtgggtgtgggctttaagacccttaacctagcttcctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgttggaggaaatatgtcactgtgggtgtgggctttaagacccttaacctagcttcctg 440

                                                                       
Query: 241 gaatccagtcttctcctagtggccttcagataaagatgtagaactctcagcccctcctgc 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaagccagtcttctcctagtggccttcagataaagatgtagaactctcagcccctcctgc 500

                                                                       
Query: 301 acaattatctgcctggaatgaacctctgaatgtgt---c---cccccccgccaagtaaat 354
           |||||||||||||||||||||||||||||||||||   |   |      |||||||||||
Sbjct: 501 acaattatctgcctggaatgaacctctgaatgtgtaagctagc------gccaagtaaat 554

                                                              
Query: 355 gttgtccttataagagttgccttggtcatggtctctgttcatagcagtaaa 405
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 gttgtccttataagagttgccttggtcatggtctctgttcatagcagtaaa 605


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 805
Length adjustment: 9
Effective length of query: 396
Effective length of database: 796
Effective search space:   315216
Effective search space used:   315216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)