BAC Information

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BAC

Clone NameMSMg01-127L04
Chromosome18 (Build37)
Map Location 87,757,841 - 87,758,124
singlet/doubletsinglet
Overlap genenone
Upstream geneCbln2, LOC100039872, LOC100039881, LOC665437, LOC435580, LOC546719, LOC383318, Ppia-ps18_1039.1
Downstream geneLOC329008, LOC100039961, LOC100039972, LOC623177
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-127L04.T7 (MSMg01no127_l04.b1)MSMg01-127L04.TJ (MSMg01no127_l04.g1)
ACCAG336166AG336167
length724725
length of high quality
(start - end)
34 (80 - 113)285 (77 - 361)
definitionCHROMAT_FILE: MSMg01no127_l04.b1 PHD_FILE: MSMg01no127_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:32 2005CHROMAT_FILE: MSMg01no127_l04.g1 PHD_FILE: MSMg01no127_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATCCCGACTCCGC
GGAATTCTCAGCTCCTCTCCCCAAATAACTACCTCGATGTTGTCATGCTC
CTTCCTTGATCATGACGGACTGATTCTCTGAACCTGTAAATCAGCCCCAA
ATGTAAGTTGACCTTCATAACACTTGTATTGCCTATCGCGCTCGTTCACA
GCACTGAAACCTTAACTAAGACAACTTTTCTTCTATTTTACTCTTGATTG
ACTTCTTCTATATATTACAGTCATAACAGTATGCCAATCATTTACTTGCT
CGAGCCTTACAGCCATATAAAATAAAATTATTTGTTTTAAGGCATTTTCC
CCATTGCTAGCATTGCTTATATATAGCTCATCTCCCAAAGCATCTCATTT
ATTCGCCCACATAGCCTTCTTCCCCCCCACGGCTCTTTGCTTTCACTAAT
GATATCACCCTATCCACCTTGTCCCCTTTTCCTCGTACTCATATTTTTAT
ATATATATTTTACATACATATATGTATACCATTTCTCGTTCTCCATCACC
GTCCTCACTCCCCATACTTTATTGTCTTTATCACCTTTTGCCCTTTCATT
CGCCCACCTTCCCCACTCATACCCATCATATTTTTTACCCCACTCTCTTT
ATTTTCCCCCTTCCCCTCCCCCATCACCCAGTTTTGCCCTTCCCTACCAT
CACACCCACAGTTGACACTATGCG
NNTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGACCCTCCTGGCTCCACCTCCC
ATGTTCTGTGTTGAAAGGATATACAGCATGAATCTTTGCTTTTGTTCCCA
TTTCTTACAAAAATCATGAGGCTTCCATGAGCTTTTTTCTGTTCTTTTAA
TTTCTGAGTATCTTTAATTTATTTTTTAAACAACGTTAATCACACTGACT
TTGACGTTTTATCTTGTTATGTATTTTTATTAGACTTGGAATTTTCTCAT
TTATTCCTAAATAAATGTTTATGTATTTTTTATATTTTGTTGTGGTTTTT
TTGTTTGTTTGNCTTTTTCCCTTCTTTCCCCTTTCCCTTCTCTCTTTTTT
TTTTTTTTCTTTTTTTTTTCCCCCCTTCNCCTCGTTTGCCTCCCCCTTTC
TTGTCCCCCTTCTCTTTCTCTCTGTTTCCTTCCCCCCTCTTCTCCTTTCC
TTCTTTCCCCTCATTCCTCTCCTCTCCCTTTCCTTTCTTTTTTTCTCTCT
CCCTCTTCTCTTCCATTATTCTCCCTTTACCTCTCTCCCCCTTCCCTCCT
CTTATTCCTCTTACCTTTTCCCCCCTTTTCCCCCCCCTTTTTCCTCCATT
TTTCCCCCCTCCCCCCTTTTCCCCCTCCTTTCTCCTTATTCCCCTCTTTC
CTTCCCTTTCTCCCTCTCACCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no127_l04.g1 MSMg01no127_l04.g1 CHROMAT_FILE:
MSMg01no127_l04.g1 PHD_FILE: MSMg01no127_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:32 2005
         (285 letters)



>mm_chr18_87757641_87758324
          Length = 684

 Score =  520 bits (269), Expect = e-152
 Identities = 281/285 (98%), Gaps = 1/285 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaccctcctggctccacctcccatgttctgtgttgaaaggatatacagcatgaatctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 484 cagaccctcctggctccacctcccatgttctgtgttgaaaggatatacagcatgaatttt 425

                                                                       
Query: 61  tgcttttgttcccatttcttacaaaaatcatgaggcttccatgagcttttttctgttctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tgcttttgttcccatttcttacaaaaatcatgaggcttccatgagcttttttctgttctt 365

                                                                       
Query: 121 ttaatttctgagtatctttaatttattttttaaacaacgttaatcacactgactttgacg 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 364 ttaatttctgagtatctttaattcattttttaaacaacgttaatcacactgactttgacg 305

                                                                       
Query: 181 ttttatcttgttatgtatttttattagacttggaattttctcatttattcctaaataaat 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 304 ttttatcttgttatgtatttttattagacttagaattttctcatttattcctaaataaat 245

                                                        
Query: 241 gtttatgtattttttatattttgttgtggtttttttgtttgtttg 285
           ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 244 gtttatgtattttttatattttgttgtgg-ttttttgtttgtttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 684
Length adjustment: 9
Effective length of query: 276
Effective length of database: 675
Effective search space:   186300
Effective search space used:   186300
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)