BAC Information

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BAC

Clone NameMSMg01-128A20
Chromosome18 (Build37)
Map Location 3,547,747 - 3,548,237
singlet/doubletsinglet
Overlap geneLOC100039273
Upstream geneLOC664794, Crem, EG621440, Cul2, EG621501, Bambi
Downstream geneLOC435549, EG664867, LOC621666, Lyzl1, LOC383374, LOC664909, Map3k8, Papd1, EG664931, LOC100039354
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128A20.T7 (MSMg01no128_a20.b1)MSMg01-128A20.TJ (MSMg01no128_a20.g1)
ACCAG336424AG336425
length717704
length of high quality
(start - end)
288 (72 - 359)499 (76 - 574)
definitionCHROMAT_FILE: MSMg01no128_a20.b1 PHD_FILE: MSMg01no128_a20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:01 2005CHROMAT_FILE: MSMg01no128_a20.g1 PHD_FILE: MSMg01no128_a20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGACCTCTTGTCTTGTGGTCCTTTGATAACAGCAAAGTTGGCATCAG
AAACAAGAGGCTCACTGCAGCCCGCTGAATGCTAACCCAGCAAAAAGAAT
TGTGAGTTCCTGGTTCAAAGAGAGACCCTGCCTCTAAGAAATAAAATAGA
TACCTGATGTGAACTCCCCTCCCCCATCTTTCTGTCTCTTTCTCTCTCTG
TGTCTCAAACACACACACACAGTGGCAGGGGGAGGGACAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAGAGAGAGAG
AGAGAGTGCACTCTTTATAAACAACCGAGTGAAAGTATCAAAGGACAGCC
AAGTTTTTAATCCTAGTGCACCTCTTGCAAGATAAAAGCTGTTGAGAGTT
CTTCAGATTCCCATGTAGTTTGGCTAACCATGCAACAGTCACAACGATGC
TCTGCCAGGTTCTTACATTCCTAGCACTCAAGACAAATCATAATCTTGAA
TATCACAAAACCTTTGTCTTTTTCCATCTTCTCTTCTGACTATATTGCTG
GAAAACTCTAATTATAATGGATCTAATGAGCATAAAACCTGTATGCGGCT
CAGAAATACTTCGGCCTGTGTCAAACCCACATATATCCTATTTATGAGCA
CGACCCTTTAGGTGTGA
NCCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTCCACAGCCCAGGAGTGATCCCT
CTGTGTCAACCTCCTATGTGCTGAATCTACAAGTGTGAGCTGGCATGCCT
TGCTGGCTCAGGCTATCTTTAAAACTATAAATCTTCTAGCAGAGAAGCTG
GCCACAAAGGAAGACAGAGAATGCCTAAATGGAAGATGAGGGTTTGGGGG
CAGAGCATTGAGGTAGAGCATTTGCTTAGCATGTGTGATCTGGGATCCTT
TCTCAGCACTGACAGAGGCAGGTATTAGACTTTTAACTGTGAACTTCAAG
GCCATAAACCTATGTTCTTCCTTTTTGTAGGCTTAATGTTAAAAAAGAAA
ATCATTTGTGAACTGAACCCTCACAGCCTGGATTGGCCTGGGTGGAATGA
TCTGAGAGGGGCAAGCAAAGCCAGATGCCTCCCTGTACACTTAATGAAGT
GTTCTCCCCCTGTTATCTAAATGGCGAGTGAAAAGGAATCCAGGGATACA
GACAAATCACAAAAGAGGCTGGGGGAAATTAGTGTGCTGCTTCTCATTAA
TGCATGGCAACACAGCGAATGTTTTAGAAGGAATTTCATGCCTGGGATTC
CACAGGGCTTTGCCACAGGAAGATCAGACTCACACTCACTATAACCATGA
ATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_a20.g1 MSMg01no128_a20.g1 CHROMAT_FILE:
MSMg01no128_a20.g1 PHD_FILE: MSMg01no128_a20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:01 2005
         (499 letters)



>mm_chr18_3547547_3548445
          Length = 899

 Score =  922 bits (477), Expect = 0.0
 Identities = 490/499 (98%), Gaps = 8/499 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   actccacagcccaggagtgatccctctgtgtcaacctcctatgtgctgaatctacaagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actccacagcccaggagtgatccctctgtgtcaacctcctatgtgctgaatctacaagtg 260

                                                                       
Query: 61  tgagctggcatgccttgctggctcaggctatctttaaaactataaatcttctagcagaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgagctggcatgccttgctggctcaggctatctttaaaactataaatcttctagcagaga 320

                                                                       
Query: 121 agctggccacaaaggaagacagagaatgcctaaatggaagatgagggtttgggggcagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agctggccacaaaggaagacagagaatgcctaaatggaagatgagggtttgggggcagag 380

                                                                       
Query: 181 cattgaggtagagcatttgcttagcatgtgtgatctgggatcctttctcagcactgacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cattgaggtagagcatttgcttagcatgtgtgatctgggatcctttctcagcactgacag 440

                                                                       
Query: 241 aggcaggtattagacttttaactgtgaacttcaaggccataaacctatgttcttcctttt 300
           ||||||||||||||||||||||||||||||||||        ||||||||||||||||||
Sbjct: 441 aggcaggtattagacttttaactgtgaacttcaa--------acctatgttcttcctttt 492

                                                                       
Query: 301 tgtaggcttaatgttaaaaaagaaaatcatttgtgaactgaaccctcacagcctggattg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tgtaggcttaatgttaaaaaagaaaatcatttgtgaactgaaccctcacagcctggattg 552

                                                                       
Query: 361 gcctgggtggaatgatctgagaggggcaagcaaagccagatgcctccctgtacacttaat 420
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 gccagggtggaatgatctgagaggggcaagcaaagccagatgcctccctgtacacttaat 612

                                                                       
Query: 421 gaagtgttctccccctgttatctaaatggcgagtgaaaaggaatccagggatacagacaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gaagtgttctccccctgttatctaaatggcgagtgaaaaggaatccagggatacagacaa 672

                              
Query: 481 atcacaaaagaggctgggg 499
           |||||||||||||||||||
Sbjct: 673 atcacaaaagaggctgggg 691


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space:   434721
Effective search space used:   434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)