BAC Information

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BAC

Clone NameMSMg01-128D22
Chromosome18 (Build37)
Map Location 44,479,072 - 44,479,511
singlet/doubletsinglet
Overlap genenone
Upstream geneDpysl3, LOC100042074, LOC100042807, Jakmip2, Spink3, Scgb3a2, Gm94, Spink5, EG433178, LOC666969, EG433180, Spink12, LOC100042855, 9530002K18Rik, Spink11, Npy6r
Downstream geneMyot, Dcp2, Mcc, LOC100042883, Ythdc2, LOC626309, LOC225457, LOC100042900
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128D22.T7 (MSMg01no128_d22.b1)MSMg01-128D22.TJ (MSMg01no128_d22.g1)
ACCAG336569AG336570
length748757
length of high quality
(start - end)
350 (72 - 421)525 (75 - 599)
definitionCHROMAT_FILE: MSMg01no128_d22.b1 PHD_FILE: MSMg01no128_d22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:16 2005CHROMAT_FILE: MSMg01no128_d22.g1 PHD_FILE: MSMg01no128_d22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGTAAATCCGCGG
AATTCTTTGTTTAGTTCCGAGCCCCATTTTTAATGGGGTTATTTGATTTT
CTGGAGTCCACCTTCTTGAGTTCTTTATATATATATTGGATATTAGTCCC
CTATCTGATTTAGGATAGGTAAAGATCCTTTCCAACTCTGTTGGTGGCCT
TTTTGTCTTATTGACAGGGTCTTTTGCCTTACAGAAGCTTTGCAGTTTTA
TGAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTT
CTATTCATAAAATTTTTCCCCCTGTGACCATATCTTCAAGGCTTTTCCCC
ACTTTCTCCTCTATAAATTTCAGTGTCTCTGGTTTTATGTAGAGTTCCTT
GATCCACTTAGATTTGACCTTACTACAAGGAGATAGGAATGGATCAATTC
ACATTCTTCTACATGATAACCACCATTTGTGCCAGGACCATTTGTTGAAA
ATGCTGTCTTTTTTCCACTGGATGGCTTTAGCTCCCTTGTCACAGATCAA
GTGACCATAAGTGTGTGGGTTCATTTCTGGGTCCTCAATTCTATTCCATT
GGTCTACTTGTCTGTCACTATACCAGTACCATGCAGTTTTTTATCACAAT
TGCTCTGTAGTACAGTTTTAGGTCAGGCATGTTGATTCCACCAGAGCTTC
TTTTATCTTTGAGAAGAGCTTTTGCTATCCTAGGCCCTTTTTGTCATN
ACAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTACTCTCCACAGCATTCTTCTTTA
AATAACTCTCTAAGCCAACACTTGCTTGCAGTCACCTTAAAATTTATTTG
ACTTGTTCTAATCTTCTGAAACATTTTTTTATCTTCAAATAAAAAAAAAT
GTGAGTTTCTTCATGATTACGGTTTATCCTTCCACTTGTATTTAAATAGA
AAGTGATGTCTAATTCAGATAATACCTTCTCTGTGGTAGTATCCTGAAGC
AGAAAAGCCACCTCTGAATATGAGGAAGGACAATGAATACTAGGCCTTTG
GAAAACCATATGGAACCTACTGCTTCAGGAACTTCCAAAAATATATATGT
ATATGAAAGAAATTTAGATGCAATCACCATAGAATGGGATAGACAATGTC
CTAACCAGATATCTTACATTACCAAGTACAACCTCTTACATCACTCTGCC
ACTCAGGATGATAACATGATAGCCTAATGAGACTGTGTGGTCTTAGCTGG
CCCTGTGAACACAGGATTCATCTTGATTATACCTGAAAACACTGGTGTGT
ATATGTGTGTGTGTGTGTGTGCGTGTGCGCCTCCTTATTCTCCTTTAAAA
TGCTCCTCCCACCCCTCCTTTTTTTGTCTTACCTTAGGCCCGCTTATTAT
ATTCCACATTATTTCCCCCCCCTTTTCCATTCTCCCCTATCAATTCTTTC
TCTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_d22.g1 MSMg01no128_d22.g1 CHROMAT_FILE:
MSMg01no128_d22.g1 PHD_FILE: MSMg01no128_d22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:16 2005
         (525 letters)



>mm_chr18_44479072_44479995
          Length = 924

 Score =  830 bits (429), Expect = 0.0
 Identities = 438/441 (99%), Gaps = 1/441 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctactctccacagcattcttctttaaataactctctaagccaacacttgcttgcagtca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tctactctccacagcattcttctttaaataactctctaagccaacacttgcttgcagtca 381

                                                                       
Query: 61  ccttaaaatttatttgacttgttctaatcttctgaaacatttttttatcttcaaataaaa 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 380 ccttaaaatttatttgacttgttctaatcttctgaaacatttttttatcttcaaat-aaa 322

                                                                       
Query: 121 aaaaatgtgagtttcttcatgattacggtttatccttccacttgtatttaaatagaaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaaatgtgagtttcttcatgattacggtttatccttccacttgtatttaaatagaaagt 262

                                                                       
Query: 181 gatgtctaattcagataataccttctctgtggtagtatcctgaagcagaaaagccacctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatgtctaattcagataataccttctctgtggtagtatcctgaagcagaaaagccacctc 202

                                                                       
Query: 241 tgaatatgaggaaggacaatgaatactaggcctttggaaaaccatatggaacctactgct 300
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 tgaatatgaggaaggacaatgaatactaggcctttgcaaaaccatatggaacctactgct 142

                                                                       
Query: 301 tcaggaacttccaaaaatatatatgtatatgaaagaaatttagatgcaatcaccatagaa 360
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 141 tcaggaacttccaaaaatatatatgtatatgaaagaaatttagatggaatcaccatagaa 82

                                                                       
Query: 361 tgggatagacaatgtcctaaccagatatcttacattaccaagtacaacctcttacatcac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81  tgggatagacaatgtcctaaccagatatcttacattaccaagtacaacctcttacatcac 22

                                
Query: 421 tctgccactcaggatgataac 441
           |||||||||||||||||||||
Sbjct: 21  tctgccactcaggatgataac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 924
Length adjustment: 10
Effective length of query: 515
Effective length of database: 914
Effective search space:   470710
Effective search space used:   470710
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)