BAC Information

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BAC

Clone NameMSMg01-128L01
Chromosome18 (Build37)
Map Location 37,373,493 - 37,373,684
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041531, Pura, 0610010O12Rik, Pfdn1, Hbegf, Slc4a9, LOC624979, Eif4ebp3, Sra1, Apbb3, Slc35a4, E230025N22Rik, Cd14, Tmco6, Ndufa2, Ik, Wdr55, Dnd1, Hars, Hars2, Zmat2, EG627427, Pcdha1, Pcdha@, Pcdha2, Pcdha3, Pcdha4, Pcdha5, Pcdha6, Pcdha7, Pcdha8, Pcdha9, Pcdha10, Pcdha11, Pcdha12, Pcdhac1, Pcdhac2
Downstream genePcdhb1, Pcdhb2, Pcdhb3, Pcdhb4, Pcdhb5, Pcdhb6, Pcdhb7, Pcdhb8, Pcdhb9, Pcdhb10, Pcdhb11, Pcdhb12, Pcdhb13, Pcdhb14, Pcdhb15, Pcdhb16, Pcdhb17, Pcdhb18, Pcdhb19, Pcdhb20, Pcdhb21, Pcdhb22, Slc25a2, Taf7, EG666693, Pcdhg@, Pcdhga1, Pcdhga2, Pcdhga3, Pcdhgb1, Pcdhga4, Pcdhgb2, Pcdhga5, Pcdhga6, Pcdhga7, Pcdhgb4, Pcdhga8, Pcdhgb5, Pcdhga9, Pcdhgb6, Pcdhga10, Pcdhgb7, Pcdhga11, Pcdhgb8, Pcdhga12, Pcdhgc3, Pcdhgc4, Pcdhgc5, Diap1, Hdac3, 4631403P03Rik, Fchsd1, Centd3, Pcdh1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128L01.T7 (MSMg01no128_l01.b1)MSMg01-128L01.TJ (MSMg01no128_l01.g1)
ACCAG336893AG336894
length707694
length of high quality
(start - end)		323 (80 - 402)194 (123 - 316)
definitionCHROMAT_FILE: MSMg01no128_l01.b1 PHD_FILE: MSMg01no128_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:52 2005CHROMAT_FILE: MSMg01no128_l01.g1 PHD_FILE: MSMg01no128_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTACCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCATTCCTTTTTCTCTAGAGATTTAGATGTGTTGTCAAGCTG
CTAGTGTGTGTTCTCTCTAGTTTCTTTTTGGAGGCACTCAGAGTTATGAG
TTTCCCTCTTAGAAATGCTTTCATTGTGTCCCATAGGTTTGGGTATGTTG
TGGCTTCATTTTCATTAAACTCTAAAAAGTCTTTAATTTCTTTCTTTATT
CCTTCCTTCACCAAGGTATCATTGAGAAGAGTGTTGTTCAGTTTCCACGT
GAATGTTGGATTTCTATTATTTATTTTGTTATTGAAGATCAGCCTTAGTC
CATGGTGATCTGATAGGATGCATGGGACAATTTCAATATTTTTGTATCTG
TTGAGGCCTGTTTTGTGACCAATTATATGGTCAATTTTGGAGAAGGTTCC
GTGAGGTACTGAGAAGAAGGTATATCCTTTTGTTTTAGGATAAAATGTTC
TGTAGATATCTATTATGTCCATTTGCTTCATACTTCTTTTTTTTTTACAT
TTCTATTAAGGGCTTTCCTCATTTACATTTCCCATGCTATCCCACAAGTC
CCCCATACCTTCCACCCTAATTTTCTACCCTCTATCCCAAACTTTCTTGG
TTCTGCCATTCCTCTTGTACGTTGTTTATTAAGTCTTGAAAGTTTTTTGG
TTTTTTC

TCATGATGTGGTAGCCTGGCGGCGCCTGGTTCCCAXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTGCTACGAAAAATACAGTACGTGATGCAA
TCCTGCTAAATATCTCCCAAGACAGGTGCACACTCACACAAACATTGTTG
ATTGCTGCCTTGCTAGGCTGTAAAGTCAGACACTGACTTAGAAATATTGA
TTAAATGGTTCATCAGATACCTATTGTGCTCTTTTCTGGCTCTGGGTACA
GAGAATGAATTATAAAATTCATTACATTTAGGAGGCTTACAAATACACAT
GTGCATAATATTACTTATGCTACAGACCAGTGCAGAAAAGCACAAGGAAA
TTATTAATAACCATTTTCATGTTTTAAAATATTGATTTTATTTGTGTTAT
ACACAGGTAACTTTGACAGCTGGCGAAATAGCTCATTACACGAAGTACTT
GCTGCCTAAGGATAAGGACCTGACTAAGAGACTGCCCGTACTCCTCATAT
AACGCATGTTCCGTGGCTATACCGTTGTAATCCCAGTGTTCTATGCCATT
ATGTGCTTCCTTGACTTTATCCAATATCTCCTGCGAATAGGTAATCTCAT
CCTATCCACTGCCATTTTATTGGTCTGTATCTCCGTATGCAAGCACCTTT
CCTATTTAATGATTGCCCTCACAACTTTTCTCTCGCCTTTTTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_l01.g1 MSMg01no128_l01.g1 CHROMAT_FILE:
MSMg01no128_l01.g1 PHD_FILE: MSMg01no128_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:52 2005
         (194 letters)



>mm_chr18_37373293_37373886
          Length = 594

 Score =  356 bits (184), Expect = e-103
 Identities = 190/192 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggtgcacactcacacaaacattgttgattgctgccttgctaggctgtaaagtcagaca 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 caggtgcacactcacacagacattgttgattgctgccttgctaggctgtaaagtcagaca 333

                                                                       
Query: 61  ctgacttagaaatattgattaaatggttcatcagatacctattgtgctcttttctggctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ctgacttagaaatattgattaaatggttcatcagatacctattgtgctcttttctggctc 273

                                                                       
Query: 121 tgggtacagagaatgaattataaaattcattacatttaggaggcttacaaatacacatgt 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 272 tgggtacagagaatgaattataaaattcattacatttatgaggcttacaaatacacatgt 213

                       
Query: 181 gcataatattac 192
           ||||||||||||
Sbjct: 212 gcataatattac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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