BAC Information

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BAC

Clone NameMSMg01-129K23
Chromosome18 (Build37)
Map Location 27,889,160 - 27,889,346
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665977, EG665646
Downstream geneEG271505, EG625997, BC051408
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-129K23.T7 (MSMg01no129_k23.b1)MSMg01-129K23.TJ (MSMg01no129_k23.g1)
ACCAG337631AG337632
length800764
length of high quality
(start - end)
76 (109 - 184)188 (127 - 314)
definitionCHROMAT_FILE: MSMg01no129_k23.b1 PHD_FILE: MSMg01no129_k23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:11 2005CHROMAT_FILE: MSMg01no129_k23.g1 PHD_FILE: MSMg01no129_k23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGACTCACTATTCGGAGAGGATCCGCGGAATTCAATTTTTTCCCTTTTGA
GCAACTGCCAAGTTCCTTTCAGTAGCAGCTGCAAAAAGCTACATCACCAA
CACCAACCCGCAATGGTCTTAAGGTTCTTGGATTTGATTTTAACTTTTCT
TTTTGGCTTGAGGTCTTATAATAACTATCTTATCAAGTGTGAAACTATTG
TTGACTTTTACTTGAAATCTCTTACAGCTGAGTCTTGAGTAATTTATTAT
GTTCTTTCTACCTATTTGTATGCTCTTCTGTAGGGTTACCTGAATCATTT
GTTCATTTTTTAATGGTGGTCTCATCGAGCTTCCGCGATTTATTAACAGG
ACTCCTCTTATATCTGCCCACATACTATCTTTTAGATATACCCCTTGCTA
GTATTTTACCCATATCTCGTACTTCGTCATTTTGAATTTTCTTCACCACC
CTTTTTCAGTTACATTATATCTTTATTTCCCTTATCCCCCCTCCTTTTTC
TTTTCGCCCCTTCCATCGCCCCTCTTTTATGTATCTTTGTTTGTTTACCC
GCCACCCCCCACCCGCCTTGAATACCTTCCCCACTATTCCCCTTTTTAGC
CTCTATTCTTGTTATTCCCCTTTTCTACGATTTGTCCTCGGCACCCTTTT
GTACCTAAGCTCTTTTTTTCTTTTTGTTCCTTTCCCTCCCATTTTTTTAC
TCCCCCCTTCTCTATCCCCCGCTTTTTTCCTCCCTTCCCTAACTCTCCCC
TTCTTCTTTATTTCTTGCCTTTCTACCCGTACCACTTGTACACCTCCTCT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTATCAGCAGAAATCTCTACATATTATCCAGAGCAAACC
TGCATTATTAACAATGATCGACCCCCCCAAAAAAATCATTTACTTCAAAA
TTTCTCAGAAAGAGAAGTATGAACATGTATGACAAAGAGACATAGACTGA
AATTTCAAGTTTGGCAGTGAAACTGTTGCTGGCTCCTGAAAGTCTCTAAG
CATTTATATTCATGGACACGAGTGAAGACAACCAAGGACTGATAGTGATG
GAGATCCTAATGGCGACAAAATGATAGAACATGCCCTTTCTGAAAACTTC
ATTAAACTATATATTTTATCCACTTAACATTTATAAATTACCCGTGTGCA
CCACTATCATATTAACAATGGCTATGTGAAATGAATACGAATCTCAAGGT
TAGAATTCAATCTTTGCTATTTTTTCCTCCTGGTTTTATGTTCTTAAGTG
AATGGCTCAACCCCCCTGCACCCCTCTCATGTATTTGTCCATTAAATGGC
GACTATTAGTATGACTCCATTAAATCACTGCAAGGTTTAAACAATTCAAA
GCCTATTTCTCACGCCCCCCAGGGATTGTCGTGCCTCCATGGCTCCCCCC
GACCCCAATTCTGTAAGTTAGGCGATATGCCTTTATGAATCCCCATACTG
TTGTCGATATGTCTCTTTTTGAGCTCCCCCATCCCCCCGCCTTGTTTTTC
AATAGTTTCAGATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no129_k23.g1 MSMg01no129_k23.g1 CHROMAT_FILE:
MSMg01no129_k23.g1 PHD_FILE: MSMg01no129_k23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:11 2005
         (188 letters)



>mm_chr18_27888957_27889547
          Length = 591

 Score =  323 bits (167), Expect = 4e-93
 Identities = 181/187 (96%), Gaps = 3/187 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   aaaaaatcatttacttcaaaatttctcagaaagagaagtatgaacatgtatgacaaagag 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 aaaaaatcatttacttcaaaatttctcagaaagagaagtatgaacatgtatgacaaagag 331

                                                                       
Query: 64  acatagactgaaatttcaagtttggcagtgaaactgttgctggctcctgaaagtctctaa 123
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 acatagactgaaatttcaactttggcagtgaaactgttgctggctcctgaaagtctctaa 271

                                                                       
Query: 124 gcatttatattcatggacacgagtgaagaca---accaaggactgatagtgatggagatc 180
           | |||||||||||| ||||||||||||||||   ||||||||||||||||||||||||||
Sbjct: 270 gtatttatattcatagacacgagtgaagacatcaaccaaggactgatagtgatggagatc 211

                  
Query: 181 ctaatgg 187
           |||||||
Sbjct: 210 ctaatgg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 188
Length of database: 591
Length adjustment: 8
Effective length of query: 180
Effective length of database: 583
Effective search space:   104940
Effective search space used:   104940
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)