BAC Information

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BAC

Clone NameMSMg01-130C01
Chromosome18 (Build37)
Map Location 30,827,189 - 30,827,336
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666073, Pik3c3, LOC666094, LOC666100, EG666111, EG666114, LOC433168
Downstream geneRit2, EG666130, Syt4, LOC383420, Slc25a46, Sap130
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130C01.T7 (MSMg01no130_c01.b1)MSMg01-130C01.TJ (MSMg01no130_c01.g1)
ACCAG337960AG337961
length703721
length of high quality
(start - end)
148 (73 - 220)109 (137 - 245)
definitionCHROMAT_FILE: MSMg01no130_c01.b1 PHD_FILE: MSMg01no130_c01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:47 2005CHROMAT_FILE: MSMg01no130_c01.g1 PHD_FILE: MSMg01no130_c01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCAAATTTGCGGCGCTAAACGACTCCTATAGTTTCAGATAGGCGGAATT
CATGATTACATTTCTAAACAAAATTACCTAATTCTGTCATTGTTTTGCCA
CTCTTCTATTCCCTGGACCTAACTGCCTAGTTGTTCTAAAACTCACTGGG
AACTGCTTTGGCTTTCTGCATACTCCATATTTTCTCTCTTGAAGATGAGC
GACCAATTTTTAACACGGATAAGTTTAATATTTATGACAAAAACTAACCA
CAATAAAAGTAAGATTATTCCTTGTTCCAAATACCATACTTCTAAATCAA
GTGCGTGCCCTATTTATGCCTTTTTCTCTCCATGGCAATATCACATTTTG
CCTCTGTCTCTCCTGCTTCCACTGTCTCCCGTCGTTCTTCGTCACTGTCA
CCCCTTGTATTTCTACGCCACCTTTCGTATCCTAAGATCTGGTTGCCCCC
CGACCAGCATTACTCTTAACGCTCACTTGTCATTGTTGCTTTAGCCTCAC
TCTTTATCCCATTTTCACTTTTTAACCCCCTATTGGTCACTTACCTCCAC
TTTTTTTGTACCGTCCCTTATTTTCAACTGTTTTTTCCCCCATCTTACCG
CCCCCTTCCCCCACTATACACCCACCCTTTCATTCTTCCCTCTTTCCCAC
TGTCCCCCCTTTACCCTTTTTTTTTTTATTTTCCTCCCCCCTTTCCCCCT
TCC
CATACAGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTCCCAATTCCTAGAAGAAGGAGAAAAAATGAAAATAAG
CTATTTCAGAGCCCTCCTTTTTCTCTACAGAAAATGGGAGACGTCCTGCT
TCCTCTCTGGCTCCTATGGAAATATTTTTAGCTTCGAATAGGATATCTGT
GTTCTATTTTCTGCTTTTTGGTGCACCAAATTGTCTATATGTCTGTCAAC
TCGTGTTTGTTTTTGCTTGGATGATCGAACGATCGCTGTTCCGTGTTTCA
TGTTGAAAAATATACAAGTACTCTTATTTTGTACATCTCACCTTGACTAC
TCACCCGCACATTTTTTTGTTTTCCCCCCCCCCCCCCATAAAGCCTTGTT
GAAGGCTGATTGCCTTTCCCCTCCTTCTGAAAAAAACAAAAAGTTCGATT
GCGGGTGGCATCCTAACGTTGCAGCTATTTTAATCAACCTCCGATTACCT
GTCCTATCGCCCCATTCCCGCATATCGCCTAGAACGATTATGTTTGAATA
TTTACCATTCTTCTTTTCCTATCTATCCGCTAATCCCTTTCGTTGATCCT
GTACACCCTTACCTACATTTTCGCTTTTTACCCATCCATCGCTGTCCCTG
CTTCTTTGTTTTGTTAATCTTTCCCCAACCTATTCCACTTCATCTCCACA
TCCCACTTCTTCCCCCTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_c01.b1 MSMg01no130_c01.b1 CHROMAT_FILE:
MSMg01no130_c01.b1 PHD_FILE: MSMg01no130_c01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:47 2005
         (148 letters)



>mm_chr18_30826989_30827536
          Length = 548

 Score =  263 bits (136), Expect = 3e-75
 Identities = 145/148 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   attacctaattctgtcattgttttgccactcttctattccctggacctaactgcctagtt 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 attacctaattctgtcattgttttgccattcttctattccctggacctaactgcctagtt 260

                                                                       
Query: 61  gttctaaaactcactgggaactgctttggctttctgcatactccatattttctctcttga 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttctaaaactcaccgggaactgctttggctttctgcatactccatattttctctcttga 320

                                       
Query: 121 agatgagcgaccaatttttaacacggat 148
           ||||||| ||||||||||||||||||||
Sbjct: 321 agatgagtgaccaatttttaacacggat 348


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 148
Length of database: 548
Length adjustment: 8
Effective length of query: 140
Effective length of database: 540
Effective search space:    75600
Effective search space used:    75600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)