BAC Information

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BAC

Clone NameMSMg01-130H12
Chromosome18 (Build37)
Map Location 31,657,474 - 31,658,098
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC433168, Rit2, EG666130, Syt4
Downstream geneLOC383420, Slc25a46, Sap130, LOC640549, Ammecr1l, Polr2d, EG626327, Wdr33, Sft2d3, Lims2, Gpr17, Myo7b, Iws1, Proc, LOC546710, Map3k2, Ercc3, Bin1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130H12.T7 (MSMg01no130_h12.b1)MSMg01-130H12.TJ (MSMg01no130_h12.g1)
ACCAG338215AG338216
length696702
length of high quality
(start - end)
309 (379 - 687)618 (78 - 695)
definitionCHROMAT_FILE: MSMg01no130_h12.b1 PHD_FILE: MSMg01no130_h12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:16 2005CHROMAT_FILE: MSMg01no130_h12.g1 PHD_FILE: MSMg01no130_h12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAAGCCTATCCTCTGCTCAAGGACTTTCTAGGACAGTGGAACACC
GGTCAAGGCTTGGCTATGTCTCAAATTTCTACCTTTCTAGCCTTAATGTA
TGTTATATCCTGTCTTCTTACTAAGACTACTACTTTTAAGACGTCTTTTG
CCTCTAAATTTTTATCTATATAATATGTTGCTCTGACAAAGCTATGGAAA
TATCCCTATGCTTATCATTAACAAAATGGGCAGTATGTAGCTGCTGATCT
AAAGCTGTGGTAGATACCTTTTTAAAGTTTGCATTATCAGATTTTAAAAC
CAAGGATTATTTTCTAACTCCCCCGCCCAGCAAAGCATAAGCAGGTCTCT
TACAAAAACATAACAGTAGATTCCTTATCTAAATTAGGATTTACACAATT
AGTTATTGACAAGAATTACAATGAATATGAAAAGACTTGCCAAGATTGGC
GATCTTAACTCTTAAAATTATCGAACAATAAATAAGCATATAGGTAAGGT
ACACAAACTTTCATAGCTATAAGGAGCTGGCCTGAATGGCAAAAAACAGT
GTCTCTGACGAAAGCATCTTGTACATTCTCTGTACCAGTCTTTTTGCCTC
ACGAGTCAGNTTTTTTAGTTGCTTGTATTTTAAGTTGGCACCGGTT
CCCGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAATATCACTCTTAGCAGAAAAGC
ACAGAATACAATTTTCTTATTTCTCAAAAATTTCAGTTATACTTTCATAA
ATCAGAAGAATAAAGTGTCATTACTTTCCTATGGCACATTCAACCATATT
TGGGGATTTTTCCTACAGACATTTGAAGCTATAAAATGTTAACATTTCTG
TTTACTGTTGAATTTTTTAGAGCTATGAATAAACCTTATTACTTACTCAG
GAAAAGTTTTGAGACTATAGATTGTTGAGATCCACACTGCACACACAGAA
GCATTGATGCCAAACTTTTGAAGGATTCTCAGTGATCCTATTGAGAAGAT
TCACTGTAGAGGATGAGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGCGCTTAGGACTTAAGAAAAAAC
ATAGACTTTCTTCAAAATCTTAATCTTGTTTTTTCATATGACCTAAGTTT
GTCCTTAAATTCATATCTCTAGCCATAGCAGTTCCTACCTACGAAACTTG
TACTTCTGTACTCTGGCCATATGTTCCCTCCTTACATTGTCCTGATTCTC
TTCTGTACCACGGCCCCTCTATACTTTCCCACATCTGTAAACCTATAGCA
GG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_h12.g1 MSMg01no130_h12.g1 CHROMAT_FILE:
MSMg01no130_h12.g1 PHD_FILE: MSMg01no130_h12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:16 2005
         (618 letters)



>mm_chr18_31657282_31658298
          Length = 1017

 Score = 1071 bits (554), Expect = 0.0
 Identities = 606/628 (96%), Gaps = 13/628 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatatcactcttagcagaaaagcacagaatacaattttcttatttctcaaaaatttcagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 aatatcactcttagcagaaaagcacagaatacaattttcttatttctcaaaaatttcagt 252

                                                                       
Query: 61  tatactttcataaatcagaagaataaagtgtcattactttcctatggcacattcaaccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tatactttcataaatcagaagaataaagtgtcattactttcctatggcacattcaaccat 312

                                                                       
Query: 121 atttggggatttttcctacag-acatttgaagctataaaatgttaacatttctgtttact 179
           |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 313 atttggggatttttccta-aggacatttgaagctataaaatgttaacatttctgtttact 371

                                                                       
Query: 180 gttgaattttttagagctatgaataaaccttattacttactcaggaaaagttttgagact 239
           |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 372 gttgaattttttagagctatgaataagccttattacttactcaggaagagttttgagact 431

                                                                       
Query: 240 atagattgttgagatccacactgcacacacagaagcattgatgccaaacttttgaaggat 299
           ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 432 atagattgttgagattcacactgcacacacagaagcaatgatgccaaacttttgaaggat 491

                                                                       
Query: 300 tctcagtgatcctattgagaagattcactgtagaggatgagcagagagagagagagagag 359
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 492 tctcagtgatcctattgagaagattcactgtagaggttgagcagagagagagagagagag 551

                                                                       
Query: 360 agagagagagagagagagagagagaga------gagagagagagagagcg--cttaggac 411
           |||||||||||||||||||||||||||      |||||||||||||||||  ||||||||
Sbjct: 552 agagagagagagagagagagagagagaaagagagagagagagagagagcgagcttaggac 611

                                                                       
Query: 412 ttaagaaaaaacatagactttcttcaaaatcttaatcttgttttttcatatgacctaagt 471
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 ttaagaaaaaacatagactttcttcaaaatcttaatcttgttttttcatatgacctaagt 671

                                                                       
Query: 472 ttgtccttaaattcatatctctagccatagcagttcctacctacgaaacttgtacttctg 531
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 672 ttgtccttaaattcatatctctagccatagcagttcctacctacaaaacttgtacttctg 731

                                                                       
Query: 532 tactctggccatatgttccctccttacattgtcctgattctcttctgtaccac-ggcccc 590
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 732 tactctggccatatgttccctccttgcattgtcctgattctcttctgtaccaccggcccc 791

                                       
Query: 591 tctatactttcccacatctgtaaaccta 618
           |||   |||||| |||||||||||||||
Sbjct: 792 tctc--ctttcctacatctgtaaaccta 817


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 101
Number of extensions: 25
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1017
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1007
Effective search space:   612256
Effective search space used:   612256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)