Query= MSMg01no130_j01.b1 MSMg01no130_j01.b1 CHROMAT_FILE:
MSMg01no130_j01.b1 PHD_FILE: MSMg01no130_j01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:25 2005
(402 letters)
>mm_chr18_57833695_57834495
Length = 801
Score = 692 bits (358), Expect = 0.0
Identities = 391/402 (97%), Gaps = 1/402 (0%)
Strand = Plus / Minus
Query: 1 gtccaattccttccccgatattcactactgatgacacaaaagaaacagctccctagactt 60
|||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 567 gtccaattccttccccaatattctctactgacgacacaaaagaaacagctccctagactt 508
Query: 61 ggatgttaagtacagcttccttggtgacaaacactgagagccaatactcaaaacccttag 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 507 ggatgttaagtacagcttccttggtgacaaacactgagagccaatactcaaagcctttag 448
Query: 121 gaaaatttatagcattaattttgaagaacatttaagattgccagaactgaaggaagacgt 180
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 447 aaaaatttatagcattaatttcgaagaacatttaagattgccagaactgaaggaagacgt 388
Query: 181 cgataaagggaaaaaaaatgtgaggccccagctgagacgcaggcaccagaaaccattaga 240
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 cgataaaggg-aaaaaaatgtgaggccccagctgagacgcaggcaccagaaaccattaga 329
Query: 241 cagttccctcggtggccaggggccagcttccagaagaattagctctagtgtttttcctat 300
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 328 cagttccctcggtggccaggggccagcttccacaagaattagctctagtgtttttcctat 269
Query: 301 gtgtgtgccgtgtccggggtccatggcactccccactccttccttcctccccatacccca 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 268 gtgtgtgccgtgtccggggtccatggcactccccactccttcctccctccccatacccca 209
Query: 361 ctttcttactccccactcccctcctcctccccctcccccatc 402
|||||||||||||||||||||||| |||||||||||||||||
Sbjct: 208 ctttcttactccccactcccctccccctccccctcccccatc 167
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 801
Length adjustment: 9
Effective length of query: 393
Effective length of database: 792
Effective search space: 311256
Effective search space used: 311256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no130_j01.g1 MSMg01no130_j01.g1 CHROMAT_FILE:
MSMg01no130_j01.g1 PHD_FILE: MSMg01no130_j01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:25 2005
(520 letters)
>mm_chr18_57665779_57666696
Length = 918
Score = 710 bits (367), Expect = 0.0
Identities = 490/557 (87%), Gaps = 49/557 (8%)
Strand = Plus / Plus
Query: 1 ctagcagcctcatagaaacctaggcatggatgcatgtgcctataaccccagcactggtaa 60
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 174 ctagcagcctcatagaaatctaggcatggatgcatgtgcctagaaccccagcactggtaa 233
Query: 61 gggaagacaattgggacctggaaactgctttcatagccaaccaagctaaaatggtgactt 120
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 234 gggaagacaattgggacctggaagctgccttcatagccaaccaagctaaaatggtgactt 293
Query: 121 tggctttagtgagggatcctgtcttaggggaatgaggcagaaagtcat-aaagcacctga 179
||| || |||||||||||| ||||||||||| ||||||||| |||||||||||
Sbjct: 294 tgggtt--------gatcctgtcttaagggaatgaggcggaaagtcattaaagcacctga 345
Query: 180 ttgcttcgtcttccacacgtacacagacagttgagcacacacacacaca-agcagcagca 238
|||||| |||||||||||||||||||||| ||||||||||||||||||| | || || ||
Sbjct: 346 ttgctttgtcttccacacgtacacagacacttgagcacacacacacacaca-ca-ca-ca 402
Query: 239 ---------------------------------gcagcagcatatagt-atcagtacaga 264
||||||||||| ||| |||||||||||
Sbjct: 403 cacacacacactcacacacacacacacacacaagcagcagcataaagttatcagtacaga 462
Query: 265 tattagaggaacagggttttttattatcattatccaccataaaagtaattatttcccaga 324
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 463 tattagaggaacagggttttttattatcattatcaaccataaaagtaattatttcccaga 522
Query: 325 ttgcttttattgtgaatgaagtgaaatccactaatgtttcccctggatttaacaaattgt 384
||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 523 atgcttttattgtgaatgaagtaaaatccactaatgtttccactggatttaacaaattgt 582
Query: 385 cttcctcagtacttaaagaaacctctgattttttttaaaaaaactctttcatatt-aaaa 443
|||||||||||||||||||| ||||||||||||||||||||| |||||| ||||| ||||
Sbjct: 583 cttcctcagtacttaaagaatcctctgattttttttaaaaaa-ctctttaatatttaaaa 641
Query: 444 aaaaatcaactaacaggaccctgatttggtcaatattccacccaccattcatttattcag 503
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 642 aaaaatcaactaacaggactctgatttggtcaatattccacccatcattcatttattcag 701
Query: 504 caaatgattattggcca 520
|||||||||||||||||
Sbjct: 702 caaatgattattggcca 718
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 918
Length adjustment: 10
Effective length of query: 510
Effective length of database: 908
Effective search space: 463080
Effective search space used: 463080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
