BAC Information

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BAC

Clone NameMSMg01-131C18
Chromosome18 (Build37)
Map Location 9,732,872 - 9,733,058
singlet/doubletsinglet
Overlap geneColec12
Upstream geneLOC665161, Fzd8, 9430022F06Rik, Ccny, LOC665176, LOC665184, EG639618, LOC100039755, Cetn1, LOC225155
Downstream geneLOC665111, LOC100039787, EG433161, Thoc1, Usp14, Rock1, LOC100039978, LOC635344, LOC435554, AK220484, LOC621832, Esco1, Snrpd1, LOC100039880, Abhd3, Mib1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131C18.T7 (MSMg01no131_c18.b1)MSMg01-131C18.TJ (MSMg01no131_c18.g1)
ACCAG338743AG338744
length732736
length of high quality
(start - end)
298 (74 - 371)485 (77 - 561)
definitionCHROMAT_FILE: MSMg01no131_c18.b1 PHD_FILE: MSMg01no131_c18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:18 2005CHROMAT_FILE: MSMg01no131_c18.g1 PHD_FILE: MSMg01no131_c18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:18 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGATGCCGC
GGAATTCTTGATTTACATGAAACTATTTCCTTAGTATTGAGGTTACAGAG
GTGTACCATGCCCATCAAAAGACCCTGTTTTATATAGTGCACTTAAAAAT
TCACTTTATTCACAAAATCATTATAAATTGTCTCAGAAATTGTAATTGTC
CTAGAAATGGTGCTAGAAAGTGTTAAACTCTCAGAGCACACGTGTTCTAT
TAGTATGTAAGAAGAGAAAGCTTAAAACAAGGACCAGGTGATGGAGGAGC
AAATCATTGAATCAGCATTATTTTGTTTTCAGGAGCTTAATATTGTCTGC
TCTTTTAAGCAGATTTTTAAAGGAGTGCGTGTGTGTGTGTGTGTGTGTGT
GTGCCCCCCNCCCCCCCCCTTTAATAAAAAAAATTTTTTTTTTTGTTTTT
TTTTTCTTTTCCTTCTTTTTCCTTTTCCTCCTTTTTTTTTCCTTCCTTTT
CCCCCTTTTCTACTCCTTTTTTCTCTCCTTTTTTCTCCCTTCCTTTTCCC
TCTCCTCCCCCTTTTTAGTTTCTTTTCTCCCGCTTTATTGACATATTTTT
TATACTTTTTTTTTTCTGTCCCCTGTCTCTGTGTTTCTTCTTCATTATTC
TAACACCTCTTTTTTTCTTTTTTTTTTCTTTTTTCACCCCTCTCCTTTTC
TTTTGCTCCTTTCCCAAGATACCTCCTCCTAA
NTTCGATGAAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGTTTTATGTTTGATGCCAAATT
CTCTACAAAATGAAGTAAATTTTTTACTAGAATAGGATGGCCCGTTATCT
GTCTTAATAAATTTAGGCATTCCCATGGCATTAAAGGCTTGTAGGCAATG
ATCAATTACATCTTTGGAGGCTTCTTCAGTATGCAGAGAAGCAGAAAGAA
ATCCTGAACAAGTATCAATACAAACATGTATATATTTTAATTTTCTAAAT
TCTGCATAATGAGTTACATCCATTTGCTTAATATGATTAGCCATGTGGCA
CTGGAGATAATGTAATACATTTAGGATATTGTTTTACAATCATTCTTGCC
TGTTCTTTAGTGATCTTAAGTCGGAGCCTTAAGGTCTGGTTAGAGAGATG
AAATTTTTCATGATTACTCATGGCCAAAGCAAAAGGATCTGAAATTAAGG
CCTCTCCCATTAGAGCTCTGCTGATGCAATCATTGCCTGCTGCTAACAGT
CCAGGAAGACCAGAATGAGATCGTATGTGGCCAATATAGAACGGGTGTTT
TTGGGCGAGAATGATGTTTTGTAATTGTGAAAACAGTCATCCTGTGTGGA
GAGCCGCCCTCACATTCACCGTTGCAAGATGGCGCTGACATCCTTGTGTT
CTAAGTGGCTAACAAATAATCTGCGCATGTGCCAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_c18.b1 MSMg01no131_c18.b1 CHROMAT_FILE:
MSMg01no131_c18.b1 PHD_FILE: MSMg01no131_c18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:18 2005
         (298 letters)



>mm_chr18_9732672_9733369
          Length = 698

 Score =  323 bits (167), Expect = 8e-93
 Identities = 182/187 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatttccttagtattgaggttacagaggtgtaccatgcccatcaaaagaccctgttttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 201 tatttccttagtattgaggttacagaggtgtaccatgcccatcaaaagatcgtgttttat 260

                                                                       
Query: 61  atagtgcacttaaaaattcactttattcacaaaatcattataaattgtctcagaaattgt 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataatgcacttaaaaattcactttattcacaaaatcattataaattgtctcagaaattgt 320

                                                                       
Query: 121 aattgtcctagaaatggtgctagaaagtgttaaactctcagagcacacgtgttctattag 180
           |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 aattgttctagaaatggtgctagaaagtgttaaactctcagagcacaagtgttctattag 380

                  
Query: 181 tatgtaa 187
           |||||||
Sbjct: 381 tatgtaa 387



 Score = 64.5 bits (33), Expect = 7e-15
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                                
Query: 151 taaactctcagagcacacgtgttctattagtatgtaa 187
           ||||| |||||||||||||||||||||||||||||||
Sbjct: 555 taaaccctcagagcacacgtgttctattagtatgtaa 591



 Score = 64.5 bits (33), Expect = 7e-15
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                                
Query: 151 taaactctcagagcacacgtgttctattagtatgtaa 187
           ||||| |||||||||||||||||||||||||||||||
Sbjct: 657 taaaccctcagagcacacgtgttctattagtatgtaa 693


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 3
Length of query: 298
Length of database: 698
Length adjustment: 9
Effective length of query: 289
Effective length of database: 689
Effective search space:   199121
Effective search space used:   199121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)