BAC Information

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BAC

Clone NameMSMg01-131K08
Chromosome18 (Build37)
Map Location 16,965,775 - 16,966,144
singlet/doubletsinglet
Overlap geneCdh2
Upstream geneLOC100040551, EG225228, LOC100040202, Ppia-ps18_172.1, EG665509
Downstream geneLOC665519, 1700001G01Rik, 4921533I20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131K08.T7 (MSMg01no131_k08.b1)MSMg01-131K08.TJ (MSMg01no131_k08.g1)
ACCAG339094AG339095
length694659
length of high quality
(start - end)
370 (320 - 689)---
definitionCHROMAT_FILE: MSMg01no131_k08.b1 PHD_FILE: MSMg01no131_k08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:56 2005CHROMAT_FILE: MSMg01no131_k08.g1 PHD_FILE: MSMg01no131_k08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAAATCGAATTTGCGGCGCTAAACACTCCATTCGGAGTGGACCGCGGATT
CTCACTTACTAGACATAGTAAGGACTTGCCTCCACCCCACCCCGCTCCAG
TACCCGCGCGCCTCCTGGTGCGCAGGGGCGCCGGTGTCCTATTGTCTTCA
TCCCAGCTCAGAGTTGCCTTCTGGCCTTTGGATTCTCTTGCCCTGGCAAT
ATTCTATGTCGATCCCACTTAGAAAGAGAGTCTGGTCCTCTGCCACAAAA
AGGCGCTTCAGCACGTTTGTGGCCCCGGATTTTTGGTACCAAACCTGGCG
ATTAGTCCCCATTTTTTGGCCATACACACATGTATATATATATTCCTTTC
TCTGTAGGTTGTCTCTGCCCTGCGTGGGTCCTGGGTAGGCAGTTGCCGGG
AGCCACCCTCACTTTTCCTACTCTCGGGAGAGCGCCAGCGAGCCTTTTCA
TTGACTGTACTTAGGGGCTTGGCTGCGACTTGGAAGCACCTGCTCCACGC
AGGTCCCGAGTTCTTTTGCCACTCCGCGACGCGGGACCCCAGCCCAACTT
TCTCGAGTCTTCCCGACCAGGGATGTTCCTACCCTAGTCCCAGTCTTCTA
CAGGTCCCATTGGGCACACCACACAGCTTTGGATGCGACCCTTGTCTGGG
CGGGGTCTAAGCGGGGGTCCCAAGTCTGTCCCCACGTGCAGTGG
CCTCATGCTAGTGTGTTAGCCTGGAGCCGCCTGTTCAAGAATTTAGGTGA
CCTATAGAATTTCCCCCGAAATCAAGTCTTGACTGTGGTAGCCCACTTGC
GTAATCTGGCATTCTCATTCCTCTAGATTGAAATTCTTGTAATTTTTTCT
TTTTNTTTTTTCTTTCTTCATTTTTATTTTTTTTTTTTTTTTATGTTTAG
TAAATTTTTGGTCATAGTTAATTCCCTTTCTCAAACACAAAAACAAAAAC
TTNTATGAATAAAAAATTGTGTCTATCTCCCTAATGAGAAAAAAGTTGCC
CTCCATTAAATCGGATCCCGGGAAATATTTTTTTTTTTATTTAATGTTTT
TTAAAACACAACTTTATCTTTTCTTATAATTTCTATTGTATACACTAACT
TTGTTTTTTATTATTATAATAATCCTTTCTAGCTTTCCCACCCTTTTTAA
AAATATTGCTTCTTTTCATATAATATCAACACACCCTCATTTTATTTTTT
TTTATATATCCATGTGTATTTAATAACATTGATATATCAATTTTTCAAAC
TCATATAATATTTATTTTGTTTATAATTTATTACCCCTCCTTCCTCCTCT
CTCTTTCTATTTATCTTTTTTATATACATCCTCTTTTAAAATTTACTTTA
TTTTTCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_k08.b1 MSMg01no131_k08.b1 CHROMAT_FILE:
MSMg01no131_k08.b1 PHD_FILE: MSMg01no131_k08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:56 2005
         (370 letters)



>mm_chr18_16965575_16966344
          Length = 770

 Score =  716 bits (370), Expect = 0.0
 Identities = 370/370 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccatacacacatgtatatatatattcctttctctgtaggttgtctctgccctgcgtgggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 ccatacacacatgtatatatatattcctttctctgtaggttgtctctgccctgcgtgggt 511

                                                                       
Query: 61  cctgggtaggcagttgccgggagccaccctcacttttcctactctcgggagagcgccagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 cctgggtaggcagttgccgggagccaccctcacttttcctactctcgggagagcgccagc 451

                                                                       
Query: 121 gagccttttcattgactgtacttaggggcttggctgcgacttggaagcacctgctccacg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gagccttttcattgactgtacttaggggcttggctgcgacttggaagcacctgctccacg 391

                                                                       
Query: 181 caggtcccgagttcttttgccactccgcgacgcgggaccccagcccaactttctcgagtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 caggtcccgagttcttttgccactccgcgacgcgggaccccagcccaactttctcgagtc 331

                                                                       
Query: 241 ttcccgaccagggatgttcctaccctagtcccagtcttctacaggtcccattgggcacac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ttcccgaccagggatgttcctaccctagtcccagtcttctacaggtcccattgggcacac 271

                                                                       
Query: 301 cacacagctttggatgcgacccttgtctgggcggggtctaagcgggggtcccaagtctgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 cacacagctttggatgcgacccttgtctgggcggggtctaagcgggggtcccaagtctgt 211

                     
Query: 361 ccccacgtgc 370
           ||||||||||
Sbjct: 210 ccccacgtgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)