BAC Information

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BAC

Clone NameMSMg01-132D14
Chromosome18 (Build37)
Map Location 20,514,341 - 20,645,101
singlet/doubletdoublet
Overlap geneDsg1b, Dsg4
Upstream geneLOC665624, LOC665629, Dsc3, Dsc2, Dsc1, Dsg1c, Dsg1a
Downstream geneLOC435558, Dsg3, Tpi-rs10, Dsg2, Ttr, LOC100040823, B4galt6, D030074E01Rik, Rnf125, Rnf138, Mep1b, EG622978, Gm944, LOC665722
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-132D14.T7 (MSMg01no132_d14.b1)MSMg01-132D14.TJ (MSMg01no132_d14.g1)
ACCAG339523AG339524
length703706
length of high quality
(start - end)		637 (67 - 703)206 (72 - 277)
definitionCHROMAT_FILE: MSMg01no132_d14.b1 PHD_FILE: MSMg01no132_d14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:41 2005CHROMAT_FILE: MSMg01no132_d14.g1 PHD_FILE: MSMg01no132_d14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:41 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(20,514,341 - 20,514,977)(20,644,897 - 20,645,101)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CAAGCTCTTCCGCTTCAAGGATTTTCTAGGACATTGGAACACTGGTGGAG
GCTTACCTATGTCAGAACTCAATCTTTAAAGGCACTTATAATAAAATAAT
ACTAAAAGAGAGCACGTGGATCCACACACCAGACTAACACAGGGATAGGG
TATGAGTATACAAGTTATGAGAATGCCTGGTTCCAGGAGGTTGAGGTTTC
CTTGAAACTCCCTGCCTTGTAAGTGCTTCCAGACCTCTCGGCCTGGCAAG
CAGACTTTACTGGAGTGTGTGTAGCACAGGGGGAGGCACACATATGCATG
GCGTATTGTAGGAGGACAGAAGGCAACTTCAGATTGAGTTCTGATCTTGT
ACCGTGCAGATCCTGAAGATGTGCTTTAGTTGTTCTGACAAATGCCATAA
CCAAGAGAAACGTGTGGAAGAGCGATTTTACTTAGGCTTGCAGTTACAGA
GGGACACCTCCCTCTGGAAACAGGCATGTCAGTAGACAACCAGAGCAAGG
ATCAGAGCAATCACATCTTTAAGCCCAAGGGTGAAGCACACAGAGCAAAC
TGGAAGTAGACTAAGGCTATGAACTCTCAAAGGCCACCCTAGTGACATCA
TTCCTCCAGCAAAGCTGTATCACCTCCCCAACTAGTGTCACCATCTGAGG
ACA

CATACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAGGCCAACCAAGGCTATGTAAAGAGATC
CTGCCTAAAAATGTTTGTGCGTGCATGTGTGTGTTAATATAAATTGATGA
AGAAATATGTACCTCCAGTTCATGGCTTTTTCTCCATGCANATGAATATT
TTCCCAAGGAACAAATACTGTANCCCCTGGTGGATGCAGCTCTCAAAAGA
CTCATTTTTATAAATTTTTCTCTTGCTTCTCANGGTTTAATGCTTCCTGA
CTTCCCACGNGCTTCCTGGTATGANAGATTCTTTGTAACAATCTTACCTG
GTTTCATAAAGAACATTANTGACTTGCTGGANAATTGCAAAACTTCACAG
TGTACAGGNAAAACTTGAATCTTAAAAACTCTTCCCTCATCTCTGATNAG
TTGAAAAGGNATTTTTATCCTATCTCCTTTCCCAAAAAAAATTAATCCTA
AAATTTGTTTACCCCCCCAAACCTAAATCTATAAATTTTNCTNNNTCCNN
NCTTTCAATAAGGGCCTCCTCCACAAACGTTCCTNCCCTATATAGAAGGG
GGGGGGGGGGGGGAATCTNNNNNNNNNNNNNNNTAGTCAATTAGGNTTAC
GNNNNTATGGGGGGAGGGGGTCTCTCTATCTATCTGCTGNNNTNGGGTGT
GGGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no132_d14.b1 MSMg01no132_d14.b1 CHROMAT_FILE:
MSMg01no132_d14.b1 PHD_FILE: MSMg01no132_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:41 2005
         (637 letters)



>mm_chr18_20514141_20515177
          Length = 1037

 Score = 1178 bits (609), Expect = 0.0
 Identities = 630/637 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggattttctaggacattggaacactggtggaggcttacctatgtcagaactcaatctt 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 aaggattttctaggatattggaacactggtggaggcttacctatgtcagaattcaatctt 260

                                                                       
Query: 61  taaaggcacttataataaaataatactaaaagagagcacgtggatccacacaccagacta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaaggcacttataataaaataatactaaaagagagcacgtggatccacacaccagacta 320

                                                                       
Query: 121 acacagggatagggtatgagtatacaagttatgagaatgcctggttccaggaggttgagg 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 acacagggatagggtatgagtatacaggttatgagaatgcctggttccaggaggttgagg 380

                                                                       
Query: 181 tttccttgaaactccctgccttgtaagtgcttccagacctctcggcctggcaagcagact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttccttgaaactccctgccttgtaagtgcttccagacctctcggcctggcaagcagact 440

                                                                       
Query: 241 ttactggagtgtgtgtagcacagggggaggcacacatatgcatggcgtattgtaggagga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttactggagtgtgtgtagcacagggggaggcacacatatgcatggcgtattgtaggagga 500

                                                                       
Query: 301 cagaaggcaacttcagattgagttctgatcttgtaccgtgcagatcctgaagatgtgctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagaaggcaacttcagattgagttctgatcttgtaccgtgcagatcctgaagatgtgctt 560

                                                                       
Query: 361 tagttgttctgacaaatgccataaccaagagaaacgtgtggaagagcgattttacttagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagttgttctgacaaatgccataaccaagagaaacgtgtggaagagcgattttacttagg 620

                                                                       
Query: 421 cttgcagttacagagggacacctccctctggaaacaggcatgtcagtagacaaccagagc 480
           ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 621 cttgcagttacagagagacacctccctctggagacaggcatgtcagtagacaaccagagc 680

                                                                       
Query: 481 aaggatcagagcaatcacatctttaagcccaagggtgaagcacacagagcaaactggaag 540
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 681 aaggatcagagcaatcacatctttaagcccaaggatgaagcacacagagcaaactggaag 740

                                                                       
Query: 541 tagactaaggctatgaactctcaaaggccaccctagtgacatcattcctccagcaaagct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tagactaaggctatgaactctcaaaggccaccctagtgacatcattcctccagcaaagct 800

                                                
Query: 601 gtatcacctccccaactagtgtcaccatctgaggaca 637
           |||||||||||||||| ||||||||||||||||||||
Sbjct: 801 gtatcacctccccaaccagtgtcaccatctgaggaca 837


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space:   643929
Effective search space used:   643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no132_d14.g1 MSMg01no132_d14.g1 CHROMAT_FILE:
MSMg01no132_d14.g1 PHD_FILE: MSMg01no132_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:41 2005
         (206 letters)



>mm_chr18_20644697_20645302
          Length = 606

 Score =  339 bits (175), Expect = 1e-97
 Identities = 197/205 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggccaaccaaggctatgtaaagagatcctgcctaaaaatgtttgtgcgtgcatgtgtg 60
           |||||| | ||||||||||||  || |||||||||||||||||||||| |||||||||||
Sbjct: 405 caggcccagcaaggctatgtagcgatatcctgcctaaaaatgtttgtgtgtgcatgtgtg 346

                                                                       
Query: 61  tgttaatataaattgatgaagaaatatgtacctccagttcatggctttttctccatgcan 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 345 tgttaatataaattgatgaagaaatatgtacctccagttcatggctttttctccatgcag 286

                                                                       
Query: 121 atgaatattttcccaaggaacaaatactgtancccctggtggatgcagctctcaaaagac 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 285 atgaatattttcccaaggaacaaatactgtagcccctggtggatgcagctctcaaaagac 226

                                    
Query: 181 tcatttttataaatttttctcttgc 205
           |||||||||||||||||||||||||
Sbjct: 225 tcatttttataaatttttctcttgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 206
Length of database: 606
Length adjustment: 8
Effective length of query: 198
Effective length of database: 598
Effective search space:   118404
Effective search space used:   118404
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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