BAC Information

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BAC

Clone NameMSMg01-132E15
Chromosome18 (Build37)
Map Location 13,774,137 - 13,859,819
singlet/doubletdoublet
Overlap geneLOC100040358, Zfp521
Upstream gene2810439F02Rik, Cabyr, LOC665356, Osbpl1a, LOC435556, Impact, Hrh4, EG383354, LOC665379
Downstream geneLOC100040094, LOC100040103, LOC100040391, LOC382096, LOC100040129, EG623867, Ss18, LOC100040446
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-132E15.T7 (MSMg01no132_e15.b1)MSMg01-132E15.TJ (MSMg01no132_e15.g1)
ACCAG339572AG339573
length759731
length of high quality
(start - end)		312 (42 - 353)665 (67 - 731)
definitionCHROMAT_FILE: MSMg01no132_e15.b1 PHD_FILE: MSMg01no132_e15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:46 2005CHROMAT_FILE: MSMg01no132_e15.g1 PHD_FILE: MSMg01no132_e15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,774,137 - 13,774,441)(13,859,155 - 13,859,819)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTAGTAACATCACTCTCTGCCTTTGCTTTGAATTTACAGAGCACACAT
TCACTTTGCTATCTTTGTCTTCACCATTTAACAGGGCCATCTGTCTTCTC
CTTCTCAGATGGGCTTGATGACACTGCATGCTTTACAATATGCATTGGGA
TGCACAGTTTACTTTAAACTATGACTTTTTATTTACATTCTTTTGGTCTT
TGGGTATTGCATATTATGCATTTTTACATTTTTTTAACATTTACTTATTT
ACTCATGAGTGGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
NNNNNNNNNNNNNNNNNNCCNNNNNNNNNNNNNTNNNNNNNNNNNNNNNN
NNNNNNNTNNNNCCCCCCCCCCTNTTCTTTCTCTTCTCTCTCCTTTTCCT
TCTCTCCCTTTCTTCTTTTTCTCTCCTTCTCCCCTTCTCTCTTCCCTCCT
TCTCTCCCCCCCCCTTCTTCTCTCCCCCTCTCTTCTCCTCCTCTTCCTCC
TTTCCCCCTTTCTCTCCTTTCCTTTCCCCCCTTCCTCCCCTCTTTTTTTT
TTTCCCTCTTTTCCCTCTCCCCTCCCTTCCCTCTTCCTCTTCTCTCTTTC
TCCCTCTTCTCTTTCCTTTCTCTTCCTTTCCCCCCCCTTTTCTCTTCTCT
CTCCCCTCCTCTCCCCCTTTCTCCTTCTTCCTCTTCTTTCCCTTTTCTTT
CTTCTTCCT

GATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAATTAACTTGGAGGAGCAAATTGTATAAGGACGT
GAAGGTTATAGATTGCTCTCTCCATAGTTACAGCACACCTCTGTGTGAAG
GGATTAAAGGGCGGCCTCTCTGGTAGCTCAGAATACTTGGAGGGGTGAGG
AGACTGTCACAGACCAAGAAGCAAAGCAGAAAAGGCGCCCAAAAGTGGCA
TGAGAGGAGGAACCTCACACGGTGTTCTTAGACACCAAGTCTCTTTGGTG
GAAGACACTGCTGTCATTTTAATGATCAGAAATACCCTAGCAGAAGTGGT
GTGCAAGTGACAGTATAAGAATACTATACTTCCTTAGAGACTAAGACAGA
ATGGCCAGATATCTCTCAGTGATTGAGGGTGCTTGCCACAGAGCCTGAGG
GCCTGAGCTCCATCCCTGGGGAATGCACTCGGTGGAAGGGAGAAGCAACT
CCACGAAGCTGTCTTCTGACCCTTAGCTGGCCTCCTGGCCCACTAGAGGT
TTCTTCTCTTGGTTTCTCTGTGAGCTGTTTAAAAACAAAATTGGGTTCAG
CGGATGCAAAGGAGACTTCCAGAACGGGGTCCTGATGCTGTCTTAAGCAT
AGAAAAAGATACAGAGAAGGGAAGAGAGACAGGNGACGATGTAAAGGAGA
CTTCCAGAACGGGGTCCTGATGCTGTCTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no132_e15.b1 MSMg01no132_e15.b1 CHROMAT_FILE:
MSMg01no132_e15.b1 PHD_FILE: MSMg01no132_e15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:46 2005
         (312 letters)



>mm_chr18_13773933_13774644
          Length = 712

 Score =  582 bits (301), Expect = e-171
 Identities = 304/305 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttagtaacatcactctctgcctttgctttgaatttacagagcacacattcact 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttagtaacattactctctgcctttgctttgaatttacagagcacacattcact 264

                                                                       
Query: 65  ttgctatctttgtcttcaccatttaacagggccatctgtcttctccttctcagatgggct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttgctatctttgtcttcaccatttaacagggccatctgtcttctccttctcagatgggct 324

                                                                       
Query: 125 tgatgacactgcatgctttacaatatgcattgggatgcacagtttactttaaactatgac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgatgacactgcatgctttacaatatgcattgggatgcacagtttactttaaactatgac 384

                                                                       
Query: 185 tttttatttacattcttttggtctttgggtattgcatattatgcatttttacattttttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttttatttacattcttttggtctttgggtattgcatattatgcatttttacattttttt 444

                                                                       
Query: 245 aacatttacttatttactcatgagtggtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aacatttacttatttactcatgagtggtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 504

                
Query: 305 gtgtg 309
           |||||
Sbjct: 505 gtgtg 509


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no132_e15.g1 MSMg01no132_e15.g1 CHROMAT_FILE:
MSMg01no132_e15.g1 PHD_FILE: MSMg01no132_e15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:46 2005
         (665 letters)



>mm_chr18_13858955_13860019
          Length = 1065

 Score = 1249 bits (646), Expect = 0.0
 Identities = 660/665 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattaacttggaggagcaaattgtataaggacgtgaaggttatagattgctctctccata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 aattaacttggaggagcaaattgtataaggacgtgaaggttatagattgctctctccata 806

                                                                       
Query: 61  gttacagcacacctctgtgtgaagggattaaagggcggcctctctggtagctcagaatac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gttacagcacacctctgtgtgaagggattaaagggcggcctctctggtagctcagaatac 746

                                                                       
Query: 121 ttggaggggtgaggagactgtcacagaccaagaagcaaagcagaaaaggcgcccaaaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttggaggggtgaggagactgtcacagaccaagaagcaaagcagaaaaggcgcccaaaagt 686

                                                                       
Query: 181 ggcatgagaggaggaacctcacacggtgttcttagacaccaagtctctttggtggaagac 240
           ||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 685 ggcatgagaggaggaacgtcacatggtgttcttagaaaccaagtctctttggtggaagac 626

                                                                       
Query: 241 actgctgtcattttaatgatcagaaataccctagcagaagtggtgtgcaagtgacagtat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 actgctgtcattttaatgatcagaaataccctagcagaagtggtgtgcaagtgacagtat 566

                                                                       
Query: 301 aagaatactatacttccttagagactaagacagaatggccagatatctctcagtgattga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aagaatactatacttccttagagactaagacagaatggccagatatctctcagtgattga 506

                                                                       
Query: 361 gggtgcttgccacagagcctgagggcctgagctccatccctggggaatgcactcggtgga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gggtgcttgccacagagcctgagggcctgagctccatccctggggaatgcactcggtgga 446

                                                                       
Query: 421 agggagaagcaactccacgaagctgtcttctgacccttagctggcctcctggcccactag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agggagaagcaactccacgaagctgtcttctgacccttagctggcctcctggcccactag 386

                                                                       
Query: 481 aggtttcttctcttggtttctctgtgagctgtttaaaaacaaaattgggttcagcggatg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aggtttcttctcttggtttctctgtgagctgtttaaaaacaaaattgggttcagcggatg 326

                                                                       
Query: 541 caaaggagacttccagaacggggtcctgatgctgtcttaagcatagaaaaagatacagag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caaaggagacttccagaacggggtcctgatgctgtcttaagcatagaaaaagatacagag 266

                                                                       
Query: 601 aagggaagagagacaggngacgatgtaaaggagacttccagaacggggtcctgatgctgt 660
           ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 265 aagggaagagagacaggggacgatgcaaaggagacttccagaacggggtcctgatgctgt 206

                
Query: 661 cttaa 665
           |||||
Sbjct: 205 cttaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space:   691025
Effective search space used:   691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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