BAC Information

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BAC

Clone NameMSMg01-132E22
Chromosome18 (Build37)
Map Location 29,341,837 - 29,342,131
singlet/doubletsinglet
Overlap genenone
Upstream geneEG271505, EG625997, BC051408
Downstream geneLOC100040930, 4930578E11Rik, LOC666073
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-132E22.T7 (MSMg01no132_e22.b1)MSMg01-132E22.TJ (MSMg01no132_e22.g1)
ACCAG339586AG339587
length725723
length of high quality
(start - end)		432 (41 - 472)296 (71 - 366)
definitionCHROMAT_FILE: MSMg01no132_e22.b1 PHD_FILE: MSMg01no132_e22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:47 2005CHROMAT_FILE: MSMg01no132_e22.g1 PHD_FILE: MSMg01no132_e22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAATCCGCGGAATTCT
AAGATAACCATGCCCACAAAGTGAAAGCCTTCTTGACCCATCTGCATCTC
CAAAAGAAAAGGAATCTGACAAACTATTGGAGAGGATACGGGGAAAAGAA
GTTTAAATTCTTTGTTAGTGGAAGTCAGTTTAATGGAGCCATTATAGAAA
TAAATTTAAGGATTTTTAAAAAAAATTTTAAAGTAGAATTACCATGTGAC
CCAGTCATACAATTCATAGGCATATATCCAAAGCACTATATATCCTATTA
CAGAAATATTTGCATAACCATGCTTATTGCCACTCTAGTTTATGATACTG
AGCAGAAACTGACCCAGTCAAGATGATCACCAACAGGTGAAAAGATAAAG
ACTGACTGAATATATCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNN
NTNTTNNNTTTTTTTTNTTTTTTTTNTTTTNNTTNTTNTTTTTTTTTTTT
TTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTNTTTT
TTTTTTTTTTTTTTTTTTNNTTTTTTTTTNTTTTTTTTTTTTTTTTTTTT
TNTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTT

ATGCAGTGGGAGGCCTGGCGGCCGCCTGGGTTCCGACTCAGAGGGAACTA
TAGAAGGTTTCGAAAACATCTAGAAAAGGAACAGAGGGCAGGTTGATAAG
AAAACATGCCAGATATACCTCGAGATTCTTAATAAAATAAAATATTGAAG
AAAAGTTCGATATTCACTATGAACTTTTCATATCAGAATGGGATTTATGA
TTCATAGTCATTCATATTGTCATGAAAATTAAATGCTTAATTTCAGATTC
GGACTTACACTTGATTGTTAAGAGACAGACAATATTGTTCCCCAACTTTT
ACCAATTATATCACCATGTTTTTGNATTAATGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTCGCGCCGCNTGNNNGNNCNNNNNCTNNTTTGCC
GTNCTNCCCTCCGCCCCCCTTTTTTTTTTTACTTCTTTTCCTTCCTTCTT
TTTTCTTTCCTCCTGCCCNCGGTCCTTGTTCCCTTCTTTCCTGATCCTCT
TTTTTACCTTTCTTTTTTTCTCCTCCCTCTCTATATCTATACCATCGTTT
AAACTTAAATCTTAATACTTTCTTTAGCTTTAACCCACTATTCTTCCTAC
TAAACTCTCTCTTTTTAATCTACCCTATTTTTTCTCTCAATATACTCTTT
TTATTATTCACCTCTCTTTTTTTTGTTTTTTTTTTTCAAATGCCCTTACC
CCGCTTTTCCCATAGTCGGAAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no132_e22.g1 MSMg01no132_e22.g1 CHROMAT_FILE:
MSMg01no132_e22.g1 PHD_FILE: MSMg01no132_e22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:47 2005
         (296 letters)



>mm_chr18_29341681_29342375
          Length = 695

 Score =  497 bits (257), Expect = e-145
 Identities = 286/296 (96%), Gaps = 1/296 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagaaaaggaacagagggcaggttgataagaaaacatgccagatatacctcgagattctt 60
           ||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||
Sbjct: 451 tagaaaaggaacagagggcaggttgatcagaaaacatgccagatatacat-gagattctt 393

                                                                       
Query: 61  aataaaataaaatattgaagaaaagttcgatattcactatgaacttttcatatcagaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 aataaaataaaatattgaagaaaagttcgatattcactatgaacttttcatatcagaatg 333

                                                                       
Query: 121 ggatttatgattcatagtcattcatattgtcatgaaaattaaatgcttaatttcagattc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 332 ggatttatgattcatagtcattcatattgtcatgaaaattaaatgcttaattgcagattc 273

                                                                       
Query: 181 ggacttacacttgattgttaagagacagacaatattgttccccaacttttaccaattata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 272 ggacttacacttgattgttaagagacagacaatattgttccccaactttcaccaattata 213

                                                                   
Query: 241 tcaccatgtttttgnattaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 296
           |||||| ||||| | | |||| ||||||||||||||||||||||||||||||||||
Sbjct: 212 tcaccacgttttagtaataatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 157


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 695
Length adjustment: 9
Effective length of query: 287
Effective length of database: 686
Effective search space:   196882
Effective search space used:   196882
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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