Query= MSMg01no132_f05.b1 MSMg01no132_f05.b1 CHROMAT_FILE:
MSMg01no132_f05.b1 PHD_FILE: MSMg01no132_f05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:49 2005
(541 letters)
>mm_chr18_22805427_22806367
Length = 941
Score = 835 bits (432), Expect = 0.0
Identities = 458/470 (97%), Gaps = 6/470 (1%)
Strand = Plus / Minus
Query: 77 gcagaagtgatattattgctacatgtgttttctagagatgaaacttattacatatgtata 136
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 941 gcagaagtgatattattgctacatgcgttttctagagatgaaacttattacatatgtata 882
Query: 137 ccatatgtaagttgaaaatccaacctgtgaagagatgaggagaatattggagaatagtat 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 881 ccatatgtaagttgaaaatccaacctgtgaagagatgaggagaatattggagaatagtat 822
Query: 197 gaaacagtgaagaattaacaggtcaatgattttaatcatagctgatgtcagcacacacac 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 gaaacagtgaagaattaacaggtcaatgattttaatcatagctgatgtcagcacacacac 762
Query: 257 acacacacacacac------agaggttagtgaaacaactcaccacttggttcttagttat 310
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 acacacacacacacacacatagaggttagtgaaacaactcaccacttggttcttagttat 702
Query: 311 ccacagtgctaggacagttgccactgccagagctgagatgctatatctaatgtgattgtg 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 ccacagtgctaggacagttgccactgccagagctgagatgctatatctaatgtgattgtg 642
Query: 371 gggccaacagaaatttgggcatttatgacattcagaaaatatgtcactctttaattacgt 430
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||
Sbjct: 641 gggccaacagaaatttgggcgtttctgacattcagaaaatatgtcactctttaattatgt 582
Query: 431 tggtgatactatgcttattagaaatgattattggaagtgaccaaaatttgagtactcaac 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 tggtgatactatgcttattagaaatgattattggaagtgaccaaaatttgagtactcaac 522
Query: 491 aaaacatatgtgtattaaaggacgactttcaaaaacatagcgtgatcttg 540
|||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 521 aaaacatatgtgtattaaaggatgactttcaaaaacatagcttgatcttg 472
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space: 494361
Effective search space used: 494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no132_f05.g1 MSMg01no132_f05.g1 CHROMAT_FILE:
MSMg01no132_f05.g1 PHD_FILE: MSMg01no132_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:49 2005
(527 letters)
>mm_chr18_22667486_22668412
Length = 927
Score = 973 bits (503), Expect = 0.0
Identities = 521/527 (98%)
Strand = Plus / Plus
Query: 1 tttgcatacgcagcacaagggtggaaacagcgactggcagaaggtaaatttcagtttcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgcatacgcagcacaagggtggaaacagcgactggcagaaggtaaatttcagtttcct 260
Query: 61 gttattatgtgacatgctagagcgtgtatagagtattagtacacaggttctacattggcg 120
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct: 261 gttattatgtgacatgctagagcatgtatagagtattagtacacaggttctacattggtg 320
Query: 121 tgtacagactgtgctagagcagctggggtattctagagtacacacactttactacaacac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 tgtacagactgtgctagagcagctggggtattctagagtacacacactttactacaatac 380
Query: 181 actatgctgaatgcatgtgctctgctagggcacatgcatgatattagaaaaacccacatt 240
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 actatgctgaatgcatgtgctctgctagggcgcatgcatgatattagaaaaacccacatt 440
Query: 241 gctacagtgtctatattatgttagtatagacatactctgtgggaacacaatacacacact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctacagtgtctatattatgttagtatagacatactctgtgggaacacaatacacacact 500
Query: 301 ctgctacagtacatacgttattgtcttattagttagggtcttattgctgtgagacaccat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgctacagtacatacgttattgtcttattagttagggtcttattgctgtgagacaccat 560
Query: 361 agccaaggcaattctcatagagggcaaagatttcattgaggctggcttgcagtttcaaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agccaaggcaattctcatagagggcaaagatttcattgaggctggcttgcagtttcaaag 620
Query: 421 gtttaatccattatcaacatggtgggatgcttagcagcatgcaggcagacatagtactgg 480
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 621 gtttaatccattatcaacatggtgggatacttagcagcatgcaggcagacatagtactgg 680
Query: 481 agactgagctaaaatgtttacatcttgatctgaaagcaggcagaagg 527
||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agaatgagctaaaatgtttacatcttgatctgaaagcaggcagaagg 727
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space: 474089
Effective search space used: 474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
