BAC Information

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BAC

Clone NameMSMg01-133B06
Chromosome18 (Build37)
Map Location 75,300,334 - 75,300,863
singlet/doubletsinglet
Overlap geneDym
Upstream gene2810433K01Rik, Cxxc1, EG435570, Mbd1, Ccdc11, LOC628298, LOC668124, LOC668126, Myo5b, Acaa2, LOC672799, Lipg, Rpl17, BC031181
Downstream geneLOC628356, EG667777, Smad7, Gm672, Zbtb7c, 4833419G08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133B06.T7 (MSMg01no133_b06.b1)MSMg01-133B06.TJ (MSMg01no133_b06.g1)
ACCAG340151AG340152
length704707
length of high quality
(start - end)
530 (131 - 660)81 (179 - 259)
definitionCHROMAT_FILE: MSMg01no133_b06.b1 PHD_FILE: MSMg01no133_b06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:47 2005CHROMAT_FILE: MSMg01no133_b06.g1 PHD_FILE: MSMg01no133_b06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGAATCCGCGG
AATTCTCCAGATTTCCTAAAACAGGCGGGCTGGTTTAAATGATGAAGTCC
AGGTTCAGTTAGAATACTTTGTCTAAAAAAAGGAGAGAAATGGAAAAGAC
TGGGTCAGCCCCAGTCCACAATTCACAAACAGAACACCAAAGTATAGAAC
AATGTGTGTGTGTGTTTGTGTGTGTCTGTGTCTGTGTGTGTTGTAAATAT
GGGGAGAATAATACTCATTTGTCTTTACATGCAGATACTCTCGAAGGATA
ATGAGAAACCAAAGCAAGTGGTTATGGGGTGGGTAGAGTGCCAGACTTTA
CACTGGCTGTTTCTCTCCTCTTCCTGTATAAACTCCAGGTCATTGACTGT
CACTTTGCTCTCTGTTTGTATCCCAAGTACCCACAACAATGCAAGCCATA
TAAATAATAATTTTAGAGAAAGTGTTTGCCCCAAGCTAGCAGTTCACAGA
TGTCAAAACCATATATGCATATTGCAGAAAACATAGACAAGCTGGAAGCT
CTCCATGATGCCAACTTCCAAAGCGTCCTCACTGCAGTCCCTTTGTCTCC
TGTGCTGGGATTGAATCCAGCATCCAGCTCCTCTCTGTGCTAGGCAAGTG
CTTTGCCACTGAACGCTGCTCCCAATTCCCACAAGTAGTTAAGCTAATAT
CATG
CCGATGCTGTGAGTAGCCTGGCGGCCGCCTGGCCATCGTAATGCGCTGAC
CTATAGAAGGTCCTTCTTAATCCTGTTTACTTAAAGTACTTATTCATCTT
GTGTATAATGGTGTTTTGCATGCACTCATGCACGCATGTGCACCATGAGC
GTGCCTGATGCTTGCAGAGACCAGCAGAGGGTGTCGAGTCCCCTGGAATG
TAGGTAAAAATGGTGATGAGCTGCCATGTGAGTGGGGAATCACACTTGGG
TCCTCTGTAACAGTAGCCAGCGCTCTTAATCACTGAGCCATCTCTCCTGC
CTCTACCTTTATTCTTGGCATATCTTTGTTATCTCACTATGTTTTTCAGG
CTAGCCTCACATACTTGCCGTTTCCCCTCTTGTATACCTGAGGCCCTATG
TTCACGTGCTTGATCGAGCCCCATTACATCCCGTCCCCTCCTGCTACGAC
TTGCCTTCGTCATCTCTCCGCCGTTGTGTTAAACCCCTGCGACTGCTTTT
TTCCCCTTTTTTACCCCTTGTCTCCATTTCCCCCCGTCTTTCCACCATCG
TTACTCCCTGTTTTGTTTTTCCATACTACTGTTCTTCTTACCCTTCCACT
GCTCTTTTCTCCTCTCCCATCGCCTATCTTTTTTTTCCTCCTTCCCCTTG
TCCTGCTCTTCTGCCTTCCTTCTCTTTCTCCCCTACTCCTTCTCCTTCTT
CCTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_b06.b1 MSMg01no133_b06.b1 CHROMAT_FILE:
MSMg01no133_b06.b1 PHD_FILE: MSMg01no133_b06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:47 2005
         (530 letters)



>mm_chr18_75300134_75301063
          Length = 930

 Score = 1017 bits (526), Expect = 0.0
 Identities = 529/530 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggagagaaatggaaaagactgggtcagccccagtccacaattcacaaacagaacaccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggagagaaatggaaaagactgggtcagccccagtccacaattcacaaacagaacaccaa 260

                                                                       
Query: 61  agtatagaacaatgtgtgtgtgtgtttgtgtgtgtctgtgtctgtgtgtgttgtaaatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtatagaacaatgtgtgtgtgtgtttgtgtgtgtctgtgtctgtgtgtgttgtaaatat 320

                                                                       
Query: 121 ggggagaataatactcatttgtctttacatgcagatactctcgaaggataatgagaaacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 ggggagaataatactcatttgtctttacatgcagatactctcgaaggataatgagaagcc 380

                                                                       
Query: 181 aaagcaagtggttatggggtgggtagagtgccagactttacactggctgtttctctcctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagcaagtggttatggggtgggtagagtgccagactttacactggctgtttctctcctc 440

                                                                       
Query: 241 ttcctgtataaactccaggtcattgactgtcactttgctctctgtttgtatcccaagtac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcctgtataaactccaggtcattgactgtcactttgctctctgtttgtatcccaagtac 500

                                                                       
Query: 301 ccacaacaatgcaagccatataaataataattttagagaaagtgtttgccccaagctagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccacaacaatgcaagccatataaataataattttagagaaagtgtttgccccaagctagc 560

                                                                       
Query: 361 agttcacagatgtcaaaaccatatatgcatattgcagaaaacatagacaagctggaagct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agttcacagatgtcaaaaccatatatgcatattgcagaaaacatagacaagctggaagct 620

                                                                       
Query: 421 ctccatgatgccaacttccaaagcgtcctcactgcagtccctttgtctcctgtgctggga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctccatgatgccaacttccaaagcgtcctcactgcagtccctttgtctcctgtgctggga 680

                                                             
Query: 481 ttgaatccagcatccagctcctctctgtgctaggcaagtgctttgccact 530
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttgaatccagcatccagctcctctctgtgctaggcaagtgctttgccact 730


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space:   478400
Effective search space used:   478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)