BAC Information

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BAC

Clone NameMSMg01-133C07
Chromosome18 (Build37)
Map Location 61,308,989 - 61,412,217
singlet/doubletdoublet
Overlap geneA630042L21Rik, Slc26a2, Pde6a
Upstream geneEG240327, LOC546714, EG225594, F830016B08Rik, LOC667578, EG667584, LOC435565, Iigp1, EG629292, LOC667597, 2010002N04Rik, Dctn4, Rbm22, Myoz3, Synpo, LOC100042675, Ndst1, Rps14, LOC667619, Cd74, Tcof1, LOC100042699, Arsi, Camk2a, Slc6a7, Cdx1, Pdgfrb, Csf1r
Downstream geneEG667279, Ppargc1b, LOC667675, 4933429F08Rik, Csnk1a1, Il17b, Pcyox1l, LOC100042730, Grpel2, Afap1l1, LOC100042738, Ablim3, Sh3tc2, Adrb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133C07.T7 (MSMg01no133_c07.b1)MSMg01-133C07.TJ (MSMg01no133_c07.g1)
ACCAG340200AG340201
length695693
length of high quality
(start - end)		569 (38 - 606)578 (68 - 645)
definitionCHROMAT_FILE: MSMg01no133_c07.b1 PHD_FILE: MSMg01no133_c07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:52 2005CHROMAT_FILE: MSMg01no133_c07.g1 PHD_FILE: MSMg01no133_c07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,411,653 - 61,412,217)(61,308,989 - 61,309,566)
sequence
XXXXXXXXXXXXXXXXXXXXXXCTATTTCAAGAGAATCCGCGGAATTCTT
TCCTTGTCCTGTAAAAGTAGATTAAGAAACGAAAAAGTGTTTCAACTCTG
CTTCTATATTGCTAGATCTCTCTCTTGAAGACGAGGTCATCATGATCCCC
CTCTGGAACACTGGCAATGGGGCCACTGTATGTGGTTGTGTAGTGTGCAC
TCTGCACAACGACATCTGGTTGAGTCCTGAAATCCATCTGTGAAAGACTT
TCTTCTTTCAGTTCTCAAAAAGTTCCCACATGGGCCATGCTTGCACATCG
GCTGCAGAGACAGGCTACCTGGTCTCAGTGGGGGAACTGGATGTGTCCTT
TCTAAGCACTGTCCATCAAATGCCCTTGCTCCTTCCTCATTGTGGCTCCC
AATTCAGGGGGACATGCTCCACTCTCTCCCACAGCCTTGCTGATCTTCTT
CCGGCTGACACAGTCACCATAACAACCATCCAGGCAAACATTCTCCTCCT
TTATCGTACATTCTCTACCTGCTCACTGACCACCATTCCTCAGTTGCCTT
CCTGTGGCTTTGCCTCCACTTCGCTACCAAATCTGTTTGTATTGGGTCTG
CCAAGGGCCTCATGCTGTGGTGAGACTCTTGCTTCTTCCTCACTACGTCA
CTGTGCTACATACATGCGGGCTCTCACATTTGCTCCCTTGGTTAA

ATGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACTATGTAGATCAGGCTAGCCTCATACTCCAGA
GATCCACCAAGTGCTGGATTAAAGACATGGCCTACCAGCTAGGCCTTTCC
TCCTTTAAGGTGCTTCTTGCCAGGCATTTGGTCAGAGCAATGAGGGGAGG
TAACTAACACAGTCAGTGACCCCGACGGATGAGCACGGGGACCTGCTTGC
CTATTGATTCTCCAAACCAGCAAGAGACCTGGGTTATAGACCTCTGTAGA
AGCTAACTGCCAAATAACAAGAGGATGTTTTCTTTGCTAAGAACAACTTC
TGTCTCCCTGCCTGTAATTGTATGGTTCCTTATTTTTCTCCTGCACTAGA
CTGAAAGTGCCTCAGGGAAGGGGCAGTTGGCAGTCATCTCTGAACACCTG
GCTCATATGGATGAATGAATGGCCGTGAAAGAGAACATATCATCAGAACG
GGCTAGAAGGCCACGGATTCCCTGACTCCCTGCTGCAATGAGACCGAGTC
ACATTATTCCTTTGGAACCAGAGATGAGAGCAGAAGGACCAAAGGCCACT
CTGGCCAAGAGATGGTAATTTTAATTACAAGAGTTGCAAGTACAGGTCAT
ACATGGAACTTGAAAGGTACAAAGATTCTATCTTTACAAATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_c07.b1 MSMg01no133_c07.b1 CHROMAT_FILE:
MSMg01no133_c07.b1 PHD_FILE: MSMg01no133_c07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:52 2005
         (569 letters)



>mm_chr18_61411266_61412234
          Length = 969

 Score = 1015 bits (525), Expect = 0.0
 Identities = 555/565 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   ggaattctttccttgtcctgtaaaagtagattaagaaacgaaaaagtgtttcaactctgc 64
           |||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 952 ggaattctttccttgggctgtaaaagtagattaagaaacaaaaaagtgtttcaactctgc 893

                                                                       
Query: 65  ttctatattgctagatctctctcttgaagacgaggtcatcatgatccccctctggaacac 124
           |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 892 ttctatattgctagatttctctcttgaagacgaggtcattatgatccccctctggaacac 833

                                                                       
Query: 125 tggcaatggggccactgtatgtggttgtgtagtgtgcactctgcacaacgacatctggtt 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 832 tggcaatggggccactgtatgtggttgtgtagtgtgcactctgcacaacgacatctggct 773

                                                                       
Query: 185 gagtcctgaaatccatctgtgaaagactttcttctttcagttctcaaaaagttcccacat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 gagtcctgaaatccatctgtgaaagactttcttctttcagttctcaaaaagttcccacat 713

                                                                       
Query: 245 gggccatgcttgcacatcggctgcagagacaggctacctggtctcagtgggggaactgga 304
           ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| 
Sbjct: 712 gggccatgcttgcacattggctgcagagacaggctacctggtctcagcgggggaactggg 653

                                                                       
Query: 305 tgtgtcctttctaagcactgtccatcaaatgcccttgctccttcctcattgtggctccca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 tgtgtcctttctaagcactgtccatcaaatgcccttgctccttcctcattgtggctccca 593

                                                                       
Query: 365 attcagggggacatgctccactctctcccacagccttgctgatcttcttccggctgacac 424
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 attcagggggacgtgctccactctctcccacagccttgctgatcttcttccggctgacac 533

                                                                       
Query: 425 agtcaccataacaaccatccaggcaaacattctcctcctttatcgtacattctctacctg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 agtcaccataacaaccatccaggcaaacattctcctcctttatcgtacattctctacctg 473

                                                                       
Query: 485 ctcactgaccaccattcctcagttgccttcctgtggctttgcctccacttcgctaccaaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 ctcactgaccaccattcctcagttgccttcctgtggctttgcctccacttcgctaccaaa 413

                                    
Query: 545 tctgtttgtattgggtctgccaagg 569
           |||||||||||||||||||||||||
Sbjct: 412 tctgtttgtattgggtctgccaagg 388


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space:   536081
Effective search space used:   536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no133_c07.g1 MSMg01no133_c07.g1 CHROMAT_FILE:
MSMg01no133_c07.g1 PHD_FILE: MSMg01no133_c07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:53 2005
         (578 letters)



>mm_chr18_61308789_61309766
          Length = 978

 Score = 1102 bits (570), Expect = 0.0
 Identities = 576/578 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actatgtagatcaggctagcctcatactccagagatccaccaagtgctggattaaagaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actatgtagatcaggctagcctcatactccagagatccaccaagtgctggattaaagaca 260

                                                                       
Query: 61  tggcctaccagctaggcctttcctcctttaaggtgcttcttgccaggcatttggtcagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggcctaccagctaggcctttcctcctttaaggtgcttcttgccaggcatttggtcagag 320

                                                                       
Query: 121 caatgaggggaggtaactaacacagtcagtgaccccgacggatgagcacggggacctgct 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 caatgaggggaggtaactaacacagtcagtgaccccgactgatgagcacggggacctgct 380

                                                                       
Query: 181 tgcctattgattctccaaaccagcaagagacctgggttatagacctctgtagaagctaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcctattgattctccaaaccagcaagagacctgggttatagacctctgtagaagctaac 440

                                                                       
Query: 241 tgccaaataacaagaggatgttttctttgctaagaacaacttctgtctccctgcctgtaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgccaaataacaagaggatgttttctttgctaagaacaacttctgtctccctgcctgtaa 500

                                                                       
Query: 301 ttgtatggttccttatttttctcctgcactagactgaaagtgcctcagggaaggggcagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgtatggttccttatttttctcctgcactagactgaaagtgcctcagggaaggggcagt 560

                                                                       
Query: 361 tggcagtcatctctgaacacctggctcatatggatgaatgaatggccgtgaaagagaaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggcagtcatctctgaacacctggctcatatggatgaatgaatggccgtgaaagagaaca 620

                                                                       
Query: 421 tatcatcagaacgggctagaaggccacggattccctgactccctgctgcaatgagaccga 480
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 621 tatcatcagaacgggctagaaggccacggattccccgactccctgctgcaatgagaccga 680

                                                                       
Query: 481 gtcacattattcctttggaaccagagatgagagcagaaggaccaaaggccactctggcca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtcacattattcctttggaaccagagatgagagcagaaggaccaaaggccactctggcca 740

                                                 
Query: 541 agagatggtaattttaattacaagagttgcaagtacag 578
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agagatggtaattttaattacaagagttgcaagtacag 778


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space:   549824
Effective search space used:   549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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