MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-133C09
Chromosome	18 (Build37)
Map Location	42,763,801 - 42,764,214
singlet/doublet	singlet
Overlap gene	LOC100042037
Upstream gene	LOC100041988, LOC100041997, Prelid2, Gm851, Sh3rf2, EG435561, Plac8l1, LOC433177, Lars, EG625929, LOC100042757, Rbm27, Pou4f3, LOC100042767, LOC100042027, Tcerg1, Gpr151
Downstream gene	Ppp2r2b, LOC100042046, LOC100042051, EG666594, Stk32a, Dpysl3, LOC100042074, LOC100042807, Jakmip2
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC100041988 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041988
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein

name	LOC100041997 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041997
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	Prelid2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:77619 MGI:1924869
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gm851 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:332309 MGI:2685697
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sh3rf2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:269016 MGI:2444628
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG435561 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:435561 MGI:3647214
definition	note : predicted gene, EG435561 pseudo : _no_value

name	Plac8l1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69401 MGI:1916651
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 5 ESTs, 4 Proteins

name	LOC433177 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:433177
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 28 ESTs, 3 Proteins pseudo : _no_value

name	Lars (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:107045 MGI:1913808
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG625929 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:625929 MGI:3645935
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 588 ESTs, 6 Proteins

name	LOC100042757 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042757
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 ESTs

name	Rbm27 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:225432 MGI:2147194
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 mRNAs, 92 ESTs, 4 Proteins

name	Pou4f3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18998 MGI:102523
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042767 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042767
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 mRNAs, 1002 ESTs, 10 Proteins

name	LOC100042027 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042027
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	Tcerg1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56070 MGI:1926421
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gpr151 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:240239 MGI:2441887
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042037 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042037
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	Ppp2r2b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72930 MGI:1920180
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC100042046 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042046
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins pseudo : _no_value

name	LOC100042051 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042051
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins pseudo : _no_value

name	EG666594 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:666594 MGI:3643329
definition	note : predicted gene, EG666594 pseudo : _no_value

name	Stk32a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:269019 MGI:2442403
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dpysl3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22240 MGI:1349762
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042074 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042074
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 167 ESTs, 1 Protein

name	LOC100042807 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042807
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 mRNAs, 238 ESTs, 8 Proteins

name	Jakmip2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76217 MGI:1923467
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 39 ESTs, 1 Protein

name	LOC100041988 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149269741 GeneID:100041988
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein product : similar to CG15462-PA transcript_id : XM_001477345.1

name	Prelid2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:113931157 GeneID:77619 MGI:1924869
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : PRELI domain containing 2 transcript_id : NM_029942.1

name	Gm851 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142351124 GeneID:332309 MGI:2685697
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : gene model 851, (NCBI) transcript_id : NM_001033426.2

name	Sh3rf2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142370548 GeneID:269016 MGI:2444628
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : SH3 domain containing ring finger 2 transcript_id : NM_172966.2

name	Plac8l1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94404407 GeneID:69401 MGI:1916651
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 5 ESTs, 4 Proteins product : PLAC8-like 1 transcript_id : XM_484719.3

name	Lars (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:120537240 GeneID:107045 MGI:1913808
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : leucyl-tRNA synthetase transcript_id : NM_134137.2

name	EG625929 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149269794 GeneID:625929 MGI:3645935
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 588 ESTs, 6 Proteins product : predicted gene, EG625929 transcript_id : XM_893968.2

name	LOC100042757 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149269795 GeneID:100042757
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 ESTs product : hypothetical protein LOC100042757 transcript_id : XM_001479120.1

name	Rbm27 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94404383 GeneID:225432 MGI:2147194
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 mRNAs, 92 ESTs, 4 Proteins product : RNA binding motif protein 27, transcript variant 1 transcript_id : XM_128924.8

name	Rbm27 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149269797 GeneID:225432 MGI:2147194
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 mRNAs, 88 ESTs, 3 Proteins product : RNA binding motif protein 27 transcript_id : XM_001479132.1

name	Pou4f3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21070953 GeneID:18998 MGI:102523
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : POU domain, class 4, transcription factor 3 transcript_id : NM_138945.1

name	LOC100042767 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149269803 GeneID:100042767
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 750 ESTs, 10 Proteins product : similar to ribosomal protein L21, transcript variant 2 transcript_id : XM_001479163.1

name	LOC100042767 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149269801 GeneID:100042767
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 mRNAs, 1001 ESTs, 10 Proteins product : similar to ribosomal protein L21, transcript variant 1 transcript_id : XM_001479156.1

name	Tcerg1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:87196333 GeneID:56070 MGI:1926421
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transcription elongation regulator 1 (CA150) transcript_id : NM_001039474.1

name	Gpr151 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:33859814 GeneID:240239 MGI:2441887
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : G protein-coupled receptor 151 transcript_id : NM_181543.1

name	Ppp2r2b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:67972401 GeneID:72930 MGI:1920180
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), beta isoform transcript_id : NM_027531.1

name	Ppp2r2b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803309 GeneID:72930 MGI:1920180
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), beta isoform transcript_id : NM_028392.2

name	Stk32a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142379975 GeneID:269019 MGI:2442403
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : serine/threonine kinase 32A transcript_id : NM_178749.3

name	Dpysl3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142389091 GeneID:22240 MGI:1349762
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : dihydropyrimidinase-like 3 transcript_id : NM_009468.2

name	LOC100042074 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149269744 GeneID:100042074
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 167 ESTs, 1 Protein product : similar to 6030465E24Rik protein transcript_id : XM_001477500.1

name	LOC100042807 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149269807 GeneID:100042807
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 mRNAs, 238 ESTs, 8 Proteins product : similar to Eukaryotic translation initiation factor 3, subunit 1 alpha transcript_id : XM_001479281.1

name	Jakmip2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149269809 GeneID:76217 MGI:1923467
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 39 ESTs, 1 Protein product : janus kinase and microtubule interacting protein 2, transcript variant 1 transcript_id : XM_129010.6

name	LOC100041988 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149269742 GeneID:100041988
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477395.1

name	Prelid2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:113931158 GeneID:77619 MGI:1924869
definition	codon_start : 1 product : PRELI domain containing 2 protein_id : NP_084218.1

name	Gm851 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85701927 CCDS:CCDS29209.1 GeneID:332309 MGI:2685697
definition	codon_start : 1 product : hypothetical protein LOC332309 protein_id : NP_001028598.1

name	Sh3rf2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27370480 CCDS:CCDS29210.1 GeneID:269016 MGI:2444628
definition	GO_function : GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 exception : mismatches in translation product : SH3 domain containing ring finger 2 protein_id : NP_766554.1

name	Plac8l1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149269792 GeneID:69401 MGI:1916651
definition	codon_start : 1 product : PLAC8-like 1 protein_id : XP_484719.3

name	Lars (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:120537241 GeneID:107045 MGI:1913808
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA] GO_function : GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0004817 - cysteine-tRNA ligase activity [Evidence IEA]; GO:0004823 - leucine-tRNA ligase activity [Evidence IEA]; GO:0016874 - ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0006423 - cysteinyl-tRNA aminoacylation [Evidence IEA]; GO:0006412 - protein biosynthesis [Evidence IEA]; GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA] codon_start : 1 product : leucyl-tRNA synthetase protein_id : NP_598898.2

name	EG625929 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82996042 GeneID:625929 MGI:3645935
definition	codon_start : 1 product : hypothetical protein protein_id : XP_899061.1

name	LOC100042757 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149269796 GeneID:100042757
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001479170.1

name	Rbm27 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:63723782 GeneID:225432 MGI:2147194
definition	codon_start : 1 product : RNA binding motif protein 27 isoform 1 protein_id : XP_128924.6

name	Rbm27 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149269798 GeneID:225432 MGI:2147194
definition	codon_start : 1 product : RNA binding motif protein 27 protein_id : XP_001479182.1

name	Pou4f3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21070954 CCDS:CCDS29212.1 GeneID:18998 MGI:102523
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] [Evidence IDA]; GO:0005667 - transcription factor complex [Evidence IC] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IDA] GO_process : GO:0035315 - hair cell differentiation [Evidence IMP]; GO:0048839 - inner ear development [Evidence IMP]; GO:0042472 - inner ear morphogenesis [Evidence IMP]; GO:0051402 - neuron apoptosis [Evidence IMP]; GO:0050885 - regulation of balance [Evidence IMP]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0007605 - sensory perception of sound [Evidence IMP] codon_start : 1 exception : mismatches in translation product : POU domain, class 4, transcription factor 3 protein_id : NP_620395.1

name	LOC100042767 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149269802 GeneID:100042767
definition	codon_start : 1 product : hypothetical protein isoform 1 protein_id : XP_001479206.1

name	LOC100042767 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149269804 GeneID:100042767
definition	codon_start : 1 product : hypothetical protein isoform 2 protein_id : XP_001479213.1

name	Tcerg1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:87196334 CCDS:CCDS29214.1 GeneID:56070 MGI:1926421
definition	GO_component : GO:0016363 - nuclear matrix [Evidence ISS]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003700 - transcription factor activity [Evidence ISS] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence ISS] [Evidence IEA] codon_start : 1 note : transcription factor CA150b; coactivator of 150 kD; TATA box binding protein (TBP)-associated factor, RNA polymerase II, S, 150kD product : transcription elongation regulator 1 (CA150) protein_id : NP_001034563.1

name	Gpr151 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33859815 CCDS:CCDS29215.1 GeneID:240239 MGI:2441887
definition	GO_function : GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : galanin receptor-like product : putative G protein-coupled receptor nGPCR-2037 protein_id : NP_853521.1

name	Ppp2r2b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312161 CCDS:CCDS29216.1 GeneID:72930 MGI:1920180
definition	GO_component : GO:0000159 - protein phosphatase type 2A complex [Evidence IEA] GO_function : GO:0008601 - protein phosphatase type 2A regulator activity [Evidence IEA] GO_process : GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), beta isoform isoform 2 protein_id : NP_082668.1

name	Ppp2r2b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:67972402 GeneID:72930 MGI:1920180
definition	GO_component : GO:0000159 - protein phosphatase type 2A complex [Evidence IEA] GO_function : GO:0008601 - protein phosphatase type 2A regulator activity [Evidence IEA] GO_process : GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), beta isoform isoform 1 protein_id : NP_081807.1

name	Stk32a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30520199 CCDS:CCDS29218.1 GeneID:269019 MGI:2442403
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006468 - protein amino acid phosphorylation [Evidence IEA] codon_start : 1 product : serine/threonine kinase 32A protein_id : NP_848864.1

name	Dpysl3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6681219 GeneID:22240 MGI:1349762
definition	GO_function : GO:0016787 - hydrolase activity [Evidence IEA] GO_process : GO:0007399 - nervous system development [Evidence IDA] codon_start : 1 note : collapsin response mediator protein 4; unc-33-like phosphoprotein product : dihydropyrimidinase-like 3 protein_id : NP_033494.1

name	LOC100042074 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149269745 GeneID:100042074
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477550.1

name	LOC100042807 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149269808 GeneID:100042807
definition	codon_start : 1 product : similar to Eukaryotic translation initiation factor 3, subunit 1 alpha protein_id : XP_001479331.1

name	Jakmip2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149269810 GeneID:76217 MGI:1923467
definition	codon_start : 1 product : janus kinase and microtubule interacting protein 2 isoform 1 protein_id : XP_129010.4

name	LOC100041997 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041997
definition	number : 1 pseudo : _no_value

name	LOC100041997 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041997
definition	number : 2 pseudo : _no_value

name	LOC100042027 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042027
definition	number : 1 pseudo : _no_value

name	LOC100042027 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042027
definition	number : 2 pseudo : _no_value

name	LOC100042027 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042027
definition	number : 3 pseudo : _no_value

name	LOC100042027 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042027
definition	number : 4 pseudo : _no_value

name	LOC100042027 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042027
definition	number : 5 pseudo : _no_value

name	LOC100042037 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042037
definition	number : 4 pseudo : _no_value

name	LOC100042037 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042037
definition	number : 3 pseudo : _no_value

name	LOC100042037 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042037
definition	number : 2 pseudo : _no_value

name	LOC100042037 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042037
definition	number : 1 pseudo : _no_value

name	LOC100042046 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042046
definition	number : 1 pseudo : _no_value

name	LOC100042046 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042046
definition	number : 2 pseudo : _no_value

name	LOC100042046 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042046
definition	number : 3 pseudo : _no_value

name	LOC100042051 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042051
definition	number : 1 pseudo : _no_value

name	LOC100042051 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042051
definition	number : 2 pseudo : _no_value

name	LOC100042051 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042051
definition	number : 3 pseudo : _no_value

name	LOC100042051 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042051
definition	number : 4 pseudo : _no_value

name	LOC433177 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149269793 GeneID:433177
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 28 ESTs, 3 Proteins product : similar to high-mobility group box 1 pseudo : _no_value transcript_id : XR_034055.1

clone name	MSMg01-424O03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-456A08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-207H21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-352N21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-105D02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-298K14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-103A06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-535E22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-211J06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-275H01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-494H20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-383C19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-079K11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-458P23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-296G10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-541H12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-436N11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-333C24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-094M15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-124M15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-434B08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-487O18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-458C21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-356M15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-336B08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-409J18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-375M22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-388D23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-338A16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-498F05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-401O12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-528C02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-263J20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-155G05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-410K03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-519M16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-328C01
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-339L19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-464H07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-104H18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-418I22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-452P16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-171L02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-081G04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-082O16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-205P04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-347C05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-169C15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-133C09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-302L11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-382O10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-479P18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-122M09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-060N04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-387M16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-407F23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-126F06
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-379G02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-513C24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-516A16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-156M02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-519L02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-520L06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-382F21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-528A23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-339J05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-399O07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-421N10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-485N17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-454J19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-134A21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-411C16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-192H13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-488G19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-396L13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-419G12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-325D08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-334N04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-307J06
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-236D12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-354P16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-122B11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-198N17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-070L08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-074N10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-365I16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-324H06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-426I07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-273D01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-139N13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-128N11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-535G01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-354A12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-123D17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-502N01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-280J20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-538O02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-297P19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-261C19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-141L03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-336D08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-358F15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-474J11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-056B01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-324J02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-289A18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-423E17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-364J17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-441J09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-441M22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-436O05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-100H20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-126H10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-327O07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195I10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-093L16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246J19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-211C10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-092L23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-024J07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-082H02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158N23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-180D04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-108A18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-342H18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-004L14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-026A03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-219A17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-049B15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-329A23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-291J18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-273B01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135E22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278H09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-249E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-163E20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227O19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-279F15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-103P17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-021F01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-093K09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-140D14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-159I02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112M09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-252J15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-221K15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-319F21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113H13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-032K15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-307I15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-146H13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097L01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-271E14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-026P24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-144G06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-189P18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291D06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-313F10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-185J14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254F17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-240M19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-232K17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-146C18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-145K07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025D19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153B15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102L16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-296A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-066O06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-019C03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135B01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-177O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-247N14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-145A23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-301O09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-035E15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-232O04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-058O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-317B04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-100D15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-337B10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-042A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-335N22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-014I16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-189I15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-109E06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-198D04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259L16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-287I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-268G17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-238O10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171J07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-107K03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-131J23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-099H23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-340K09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-147N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291F23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-327C24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-314P07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-192G19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-346J13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-011C09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-312D05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-094E16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-326H10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-329F21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292I10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156M04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259J19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-187E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135C06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127K02
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-133C09.T7 (MSMg01no133_c09.b1)	MSMg01-133C09.TJ (MSMg01no133_c09.g1)
ACC	AG340203	AG340204
length	1,260	681
length of high quality (start - end)	---	415 (70 - 484)
definition	CHROMAT_FILE: MSMg01no133_c09.b1 PHD_FILE: MSMg01no133_c09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:53 2005	CHROMAT_FILE: MSMg01no133_c09.g1 PHD_FILE: MSMg01no133_c09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:53 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	TTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTCTCTTTTCTCTCT TCTTGNGTCGTCGTCTGCTGTTTCGTTCTCTGTTCTCTCTTTGCTCCCCC TCCTNCTCTTCTGCTNTCGGTTTCCTCGGCTGTTCCTCTCGNCCGTCCGC TCCTCTCTTCTCCTCCCTCTTCTCTCGTCGTCTGTCTCCTCTCTCTCTCC TTCTGCCTTTGCCTAGCACGCGTGCACTGCGTGCGTAGCGACTATCGCCA TGGCGATCGCTGCGCACCTCTATGGCGGTACGTTACTCCCAAAATCGTTC CTCTTTTCTTCTCATGCANTTCTTTTGACGCNACTCTACACAACACCGGG CTACATTGCGAACTACTAACCATTAATATATACTTCCTGATAATCTGAAT ACAGTGGAAGCCAGGCCGACGACAAGCTGAGCAGACGTACTACGCGCTGC CATACATACAGTACATATATATTACACATTACATCATACTCTGGACGCGA ATGACCTCAAGGCATCATCAGTAGACCAAGCGCACGATACACTCATCACG AAANATAGGAACATAGTGATAGGANCGCGATGTCAATGTGTATGACGAAT CTGTGCATCGACATGTCTCCGTACTACCGCGTTTCTGTCATCGCTACTGC CGTATGATTCACACTGACGCGTGCGTATGTGACTGTGACTCACGTTGCTG CTCATGCTCTTTGTCCGTTCTGCATGTTCCTGTAGGCCTCGTCTCTGCCG TTTAATTCGCTGACCTGCNACACCACGCGACTCACGTTCTATTCATCTCT AGCGCCGTAGTATTCGTACTGCTGCAATCGCCTGTCAACCGCGTCGGCAA CAGATAGTGTACGTGTCGTATCACGAGGAACATAACGACCGTGTGAAGCT GTATCGTTTGTGTGTGACTGAGATCGTAGCGTCGACGACCGTTGCACTCT TATACGTGAATCGCGACAGTTCAGGTCGATGATATCAGAATACTAGCGGC ACGTAATACTATGCAGAGATAGCTTATGACGATGCCGACGAGTGAGACCA CACCTGACGAGCATCTGTCAATACACGCGATACGAGAACCAGANTGGATG CGCCATACCGATCTACTCAGCTTGCCCTCATATCATCTGCCGTCGTACAG ATGNATACGCGAATCGTGTATATTCAATAACAGGCACACTATTACTCTGA ATACATCAATACATTTCAGAGTGATCGCACCTGTCTCAGCGAGCGCGCAT ATCGCTATAG	TGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXAGTGCACAGGACTGCCATTCATCCACCTTCC CACATGGGAAGTGTCCCTGGGAGGAGGCCAGCTAGGGGTATTTGGTAAAA AGTCCTTATATATCTCTCAGAAGCCTAAGGGTGGCCTTTAGATCCCACTC AGCGGTCGCAGGATTCTGCAAGCATCTAGGTTTTGAATGAAGCATCATTC TTCTAATGTAATGGTTCTCAACCTGTGGGTTTCGACCCATTTGGAAGTCT GTGTCCCTTTCACAGGGGATGTCTAAGACCATCAGAAAACACAAAGCTGG GCGTGGTGGTGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGC AGATTTCTGAGTTCGAGGCCAGACTGGTCTACAAAGTGAGTTCCAGGACA GCCAGAGCTATACAGAGAAACCCTGACTTGAAAACAACAACAACAACTAG CATAAACAAACAAACAAACTATCCAAAAACCAAAACACCTCTAGTATTTA CAGTACCATTCATAACATAACATTAGCAAAATTACAGTTATGAAGTAACA TCAGAAATGATTTTAGGTCGCGGGGTGCCATCCCAACATTAGGAACTGTA CTAAAGGTTTGTCGCACTAGGAAAGTTGAGT
quality values	Open. Hide. 9 9 9 9 9 9 9 9 9 17 24 9 9 9 9 9 12 17 24 24 24 9 9 7 7 3 0 3 8 8 12 9 12 12 12 9 6 6 6 6 6 7 7 6 6 6 6 6 8 10 8 11 8 8 3 0 3 6 6 6 6 8 6 6 8 6 6 6 6 6 6 8 10 8 6 6 8 10 8 8 8 6 6 6 8 8 15 10 9 6 10 10 12 12 10 9 9 9 8 8 8 9 9 3 0 3 8 6 6 6 6 6 6 8 3 0 3 8 8 6 6 6 8 6 6 6 7 6 10 10 10 10 11 10 6 6 6 8 8 6 3 0 3 8 6 6 8 8 6 6 8 11 12 6 6 6 6 8 15 14 9 8 8 10 8 8 6 6 6 6 8 8 8 8 8 8 8 10 12 13 19 15 11 10 10 10 10 9 8 8 11 10 9 9 9 12 27 19 15 6 6 6 8 8 8 8 7 8 9 8 10 8 12 13 9 9 10 10 8 8 9 8 8 6 6 8 6 8 8 8 8 8 10 10 10 10 8 8 8 6 6 6 8 8 8 9 9 7 10 8 8 8 8 8 8 8 10 11 11 10 11 10 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 11 11 9 15 8 8 8 8 6 6 6 6 8 8 10 13 8 10 8 8 6 6 6 6 6 6 12 10 6 6 6 6 6 9 10 10 9 9 9 3 0 3 10 10 10 8 8 10 8 8 6 6 3 0 3 9 9 9 9 11 10 10 8 8 8 10 8 8 8 8 8 8 8 8 6 6 8 8 11 9 9 9 8 10 8 8 8 8 6 6 6 6 6 6 6 6 8 9 9 9 9 8 8 8 8 8 8 10 10 10 8 8 8 8 10 10 8 8 8 8 8 8 8 6 7 8 6 6 6 6 6 6 6 10 8 13 11 11 11 11 8 11 10 8 6 6 6 7 8 8 10 10 9 9 9 8 6 6 6 6 6 6 6 6 6 10 7 9 7 9 6 8 8 8 9 9 9 10 10 9 10 11 11 10 9 8 8 8 8 8 8 8 8 8 8 8 8 9 8 8 8 8 8 8 8 8 10 8 8 8 8 10 8 8 10 6 6 6 8 8 11 13 10 10 9 10 8 8 8 8 8 6 6 8 8 8 8 8 8 8 8 8 8 8 8 8 6 6 8 8 8 8 8 8 8 8 9 10 8 10 8 6 6 6 6 6 8 8 8 10 8 9 9 9 3 0 3 8 8 8 8 8 8 8 8 8 8 6 6 10 10 9 8 8 8 3 0 3 10 8 10 9 9 10 10 9 9 8 8 7 7 6 6 8 8 8 8 8 8 8 8 8 8 8 8 8 6 8 6 6 8 6 8 8 8 8 8 8 8 8 8 6 6 6 6 11 12 10 10 11 9 8 8 8 8 10 9 9 10 9 9 9 9 8 10 8 10 8 10 10 10 9 8 8 8 8 8 6 6 8 8 10 9 9 9 10 9 9 8 8 6 6 8 8 8 9 10 10 8 8 12 8 8 8 8 8 8 10 8 10 10 8 8 10 10 8 8 8 8 8 8 8 8 8 6 6 8 8 8 8 8 8 10 16 16 16 9 9 9 10 10 15 15 9 10 8 8 8 8 8 8 8 8 8 10 9 10 11 10 10 8 8 8 10 10 10 8 8 8 8 8 9 8 10 7 6 6 6 9 9 7 7 7 8 10 10 10 8 9 3 0 3 10 10 10 10 11 11 11 11 11 11 10 10 10 6 8 6 6 8 8 10 10 10 8 8 11 11 12 11 11 11 18 17 9 10 10 9 9 10 8 8 8 10 8 8 6 6 8 8 10 6 6 6 6 8 7 7 8 8 8 8 10 9 9 8 8 8 8 6 8 8 8 10 11 10 10 11 11 11 9 10 9 9 8 6 6 6 6 10 10 10 8 8 8 8 8 10 8 8 8 10 8 8 8 8 6 6 8 6 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 6 9 13 12 10 10 6 6 8 6 8 8 10 16 8 6 6 6 6 6 6 7 6 6 6 6 6 6 6 6 6 9 6 6 6 6 6 6 8 8 8 6 6 6 8 10 9 9 9 7 7 8 8 8 8 8 6 6 6 6 6 6 8 10 10 10 8 11 6 6 8 8 13 8 8 6 6 6 6 6 8 8 11 10 7 7 6 6 8 8 9 10 9 9 9 8 8 8 8 8 8 9 8 8 8 8 8 8 7 7 11 10 10 6 6 6 6 8 8 10 6 6 6 6 8 8 10 12 7 7 8 8 7 7 6 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 6 6 6 6 10 13 13 10 11 11 12 12 11 10 10 8 6 8 7 6 8 8 6 6 6 6 6 7 10 8 8 6 6 6 6 7 10 7 7 6 6 6 3 0 3 8 8 8 8 8 10 8 8 10 10 8 8 8 10 8 10 8 6 6 6 8 8 6 6 8 10 10 8 6 6 6 6 9 11 13 11 13 11 10 12 8 8 7 6 6 6 7 11 10 9 9 9 9 10 10 10 10 3 0 3 10 9 10 9 8 8 8 8 8 8 7 9 6 6 6 6 6 6 6 6 6 8 8 9 8 8 8 8 8 8 8 10 10 9 8 6 6 6 6 6 6 8 8 8 7 6 6 6 6 8 6 6 6 6 6 6 8 8 8 6 6 6 6 6 6 10 10 10 6 8 6 6 6 6 6 6 6 8 6 6 7 8 8 8 6 6 8 6 6 6 6 6 6 8 8 12 8 8 6 6 8 8 10 10 8	Open. Hide. 6 6 6 8 8 17 12 10 10 9 13 13 19 23 24 37 37 23 23 28 23 23 32 27 27 12 12 12 11 7 8 8 8 8 8 15 18 17 18 15 19 29 23 23 10 12 12 26 22 33 30 21 17 11 11 11 11 10 15 20 18 28 28 30 37 37 47 38 38 42 50 50 50 50 50 50 47 47 50 57 57 57 47 47 42 42 42 51 42 42 41 42 41 41 43 43 57 68 50 51 50 50 50 50 50 50 59 47 46 46 46 47 57 57 48 48 43 42 42 42 44 57 57 57 57 57 57 50 50 50 50 50 68 68 68 50 50 68 68 68 51 50 50 50 50 50 68 68 68 48 46 38 38 38 46 57 68 68 68 68 68 68 68 68 68 50 50 50 50 50 52 57 57 57 68 68 68 68 57 57 57 57 57 57 57 68 68 68 68 57 57 57 57 57 68 68 68 57 57 57 57 57 57 57 68 68 57 57 57 68 68 68 68 68 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 62 68 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 68 57 57 59 59 57 59 57 57 57 68 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 52 52 52 57 57 57 57 52 52 52 57 57 57 57 57 52 52 52 59 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 59 59 57 57 57 43 43 43 57 57 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 59 59 59 59 59 57 54 54 57 57 57 54 57 57 59 59 59 59 54 54 54 59 54 54 54 54 54 68 54 57 57 47 47 43 43 43 43 43 43 43 43 43 48 48 43 43 36 36 39 59 37 37 28 28 23 28 23 31 31 47 37 37 35 31 31 35 37 39 39 40 40 37 37 32 35 35 39 39 43 35 37 35 35 35 30 30 31 35 35 31 28 39 30 30 30 37 32 36 37 39 32 28 28 25 19 17 14 15 18 18 20 18 22 11 11 11 11 11 11 18 23 15 14 13 12 15 15 14 14 12 15 12 15 15 23 18 20 17 16 9 10 8 8 8 8 10 10 19 23 18 15 10 10 13 13 13 11 13 11 11 8 8 8 7 8 8 8 8 15 15 15 8 10 10 10 10 9 9 10 12 16 15 20 27 30 28 22 18 19 8 8 8 19 14 15 12 10 10 10 15 15 22 25 16 15 11 11 12 21 20 24 20 13 12 8 8 8 8 7 10 9 9 12 12 7 8 7 7 12 21 21 28 24 26 15 12 12 9 9 9 9 9 9 8 10 8 8 8 8 8 8 10 10 10 12 12 8 12 8 8 8 8 23 13 14 10 9 9 8 8 8 8 8 8 10 10 10 10 8 8 10 8 8 8 8 8 10 10 10 10 8 9 8 8 8 10 10 10 19 11 11 11

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no133_c09.g1 MSMg01no133_c09.g1 CHROMAT_FILE:
MSMg01no133_c09.g1 PHD_FILE: MSMg01no133_c09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:53 2005
         (415 letters)



>mm_chr18_42763601_42764415
          Length = 815

 Score =  669 bits (346), Expect = 0.0
 Identities = 397/414 (95%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgcacaggactgccattcatccaccttcccacatgggaagtgtccctgggaggaggcc 60
           ||||||||||| |||| ||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 201 agtgcacaggattgccgttcatcctcctttccacatgggaagtgtccctgggaggaggcc 260

                                                                       
Query: 61  agctaggggtatttggtaaaaagtccttatatatctctcagaagcctaagggtggccttt 120
           || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agttaggagtatttggtaaaaagtccttatatatctctcagaagcctaagggtggccttt 320

                                                                       
Query: 121 agatcccactcagcggtcgcaggattctgcaagcatctaggttttgaatgaagcatcatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 agatcccactcagcggtcgcaggattctgcaagcatctaggttttgaataaagcatcatt 380

                                                                       
Query: 181 cttctaatgtaatggttctcaacctgtgggtttcgacccatttggaagtctgtgtccctt 240
           |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 381 cttctaatgtaatggttctcaacctgtgggtcgcgacccatttggaagtctgtgtccctt 440

                                                                       
Query: 241 tcacaggggatgtctaagaccatcagaaaacacaaagctgggcgtggtggtgcacgcctt 300
           ||||||||||||||| ||| |||||||||||||||||| ||||||||||| |||||||||
Sbjct: 441 tcacaggggatgtctcagatcatcagaaaacacaaagccgggcgtggtggcgcacgcctt 500

                                                                       
Query: 301 taatcccagcactcgggaggcagaggcaggcagatttctgagttcgaggccagactggtc 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 taatcccagcactcgggaggcagaggcaggcagatttctgagttcgaggccatactggtc 560

                                                                 
Query: 361 tacaaagtgagttccaggacagccagagctatacagagaaaccctgacttgaaa 414
           ||||||||||||||||  |||||||| |||||||||||||||||||||||||||
Sbjct: 561 tacaaagtgagttccaacacagccagggctatacagagaaaccctgacttgaaa 614


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space:   327236
Effective search space used:   327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information