Query= MSMg01no134_a15.b1 MSMg01no134_a15.b1 CHROMAT_FILE:
MSMg01no134_a15.b1 PHD_FILE: MSMg01no134_a15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:03 2005
(715 letters)
>mm_chr18_87388044_87389158
Length = 1115
Score = 1176 bits (608), Expect = 0.0
Identities = 673/698 (96%), Gaps = 10/698 (1%)
Strand = Plus / Plus
Query: 1 agcaatattcagcaaaacaacaggcagtatcaacctaaatggagagatacttgaagcatt 60
|||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 201 agcaatattcagcaaaccaacaggcaatatcaaactaaatggagagatacttgaagcatt 260
Query: 61 cctactaaaatcagggacaagatgaggatgtccacttgtccca---ctgttcaatatagt 117
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 261 cctactaaaatcagggacaagatgaggatgttcacttgtcccatatctgttcaatatagc 320
Query: 118 acatgaagtgctagttagaacaataagacaacaaaaagagatcaaggggatacagattgg 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acatgaagtgctagttagaacaataagacaacaaaaagagatcaaggggatacagattgg 380
Query: 178 caaagaaataagatatttgccatgatatgattgtatatataattgatccccaaaatacta 237
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 381 caaagaaataagatatttgccatgatatgattgtatatatcatcgatccccaaaatacta 440
Query: 238 ccagagagattctccagctgataaaattaactcaaataaatcagtagccttcctttatac 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccagagagattctccagctgataaaattaactcaaataaatcagtagccttcctttatac 500
Query: 298 aaatggtaaacatgctgagaaagaaattatagaaacaacacccttcacaagagccacaaa 357
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 501 aaatggtaaacatgctgagaaagaaattagggaaacaacacccttcacaagagccacaaa 560
Query: 358 taatataaagtatcttggggtaactctaaccaaaccagtaaaagatctggaggacaataa 417
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taatataatgtatcttggggtaactctaaccaaaccagtaaaagatctggaggacaataa 620
Query: 418 cttcaagtctctcaagaaagaaataaaaaaaaaaaacagttcttagaaaatgaagagatc 477
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 621 cttcaagtctctcaagaaagaaataaaaaaaaaa----gttcttagaaaatgaagagatc 676
Query: 478 tctgatgctcatgggttaatagaattaat-agaataatttgaattgctatatttggatta 536
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 677 tctgatgctcatgggttaatagaattaattagaataatttgaattgctatatttggatta 736
Query: 537 caatgaaatgctgagaataatttaatctaagtttctcttagcaaacaatataatttgaat 596
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 737 caatgaaatgctgagaataatttaatctaagtttctcttagcaaacaatattatttgaat 796
Query: 597 taaaatatgtacatacacattttagacgtgaaggagtttattcccctccccaggaatata 656
|||||||||| |||| |||||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 797 taaaatatgtgcatatacattttagatgtgaaggagtttattcccctccccaggaattta 856
Query: 657 catggatttt-aaaaattttgatattgcatatatgtat 693
|||||||||| |||||||| ||||||||||||||||||
Sbjct: 857 catggatttttaaaaattt-gatattgcatatatgtat 893
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 715
Length of database: 1115
Length adjustment: 10
Effective length of query: 705
Effective length of database: 1105
Effective search space: 779025
Effective search space used: 779025
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no134_a15.g1 MSMg01no134_a15.g1 CHROMAT_FILE:
MSMg01no134_a15.g1 PHD_FILE: MSMg01no134_a15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:03 2005
(805 letters)
>mm_chr18_87532108_87533312
Length = 1205
Score = 1471 bits (761), Expect = 0.0
Identities = 794/805 (98%)
Strand = Plus / Minus
Query: 1 taaaagagtgtggagttaatttaattgatccctatcagggtgatctgaagatgaagtgga 60
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 1005 taaaagagtgtggagttaatttaattgatcactagcagggtgatctgaagatgaagtgga 946
Query: 61 gacatgtgacacataccctctttccaagtgcttccccatccaatccaatatacagctgca 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 945 gacatgtgacacataccctctttccaagtgctttcccatccaatccaatatacagctgca 886
Query: 121 actactattgacatctagttattgaaagaaaaagaaagagaaagaaagaacaaaatgagc 180
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 885 actactattgagatctagttattgaaagaaaaagaaagtgaaagaaagaacaaaattagc 826
Query: 181 acagacaatccactgctatgacattcaggcaacagtaaagtaaaaagaaacctccagaca 240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 825 acagacaatccactgctatgacattcaggcaacagtaaaataaaaagaaacctccagaca 766
Query: 241 tttatatgtgtagctgctggatggacagcatctgcttctgacgcttgctcatcacttaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 tttatatgtgtagctgctggatggacagcatctgcttctgacgcttgctcatcacttaca 706
Query: 301 gaagtgcaagccaaaattggaaacacaattgatattgatagtagctggctgctgaagcag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 gaagtgcaagccaaaattggaaacacaattgatattgatagtagctggctgctgaagcag 646
Query: 361 aattgtactgcttgtaacaaatgatgaagaaattaagggcactgccctgaaactattacc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 aattgtactgcttgtaacaaatgatgaagaaattaagggcactgccctgaaactattacc 586
Query: 421 tcatcacccattgctgggctatacagagccttaaccgaagagtggctctttagcatccaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 585 tcatcacccattgctgggctatacagagccttaaccgaagagtggctctttggcatccaa 526
Query: 481 cattcagagtgtagcacaaatgacagaatgaaaaccataaatgtgttattgtcagcttac 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 cattcagagtgtagcacaaatgacagaatgaaaaccataaatgtgttattgtcagcttaa 466
Query: 541 aaacatgatctatattgtctgcaaaggaaaaatatccagatatactgtacaaattgaaag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 aaacatgatctatattgtctgcaaaggaaaaatatccagatatactgtacaaattgaaag 406
Query: 601 gctgcttaaaaactaaaataaattgtaagtataaaaatgatagcaatgtatccatttgaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 gctgcttaaaaactaaaataaattgtaagtataaaaatgatagcaatgtatccatttgaa 346
Query: 661 tgaggtgattttaaaatgaacactcttgaagcaaaaaatatccaaggaataggttggtct 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tgaggtgattttaaaatgaacactcttgaagcaaaaaatatccaaggaataggttggtct 286
Query: 721 tttggcaaaggtgattagtacagggtcaaaggccagatgctgttttggcactgtgaacat 780
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 tttggcaaagatgattagcacagggtcaaaggccagatgctgttttggcactgtgaacat 226
Query: 781 aagtcgtggttggtacagaaaagta 805
|||||||||||||||||||||||||
Sbjct: 225 aagtcgtggttggtacagaaaagta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 805
Length of database: 1205
Length adjustment: 10
Effective length of query: 795
Effective length of database: 1195
Effective search space: 950025
Effective search space used: 950025
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
