Query= MSMg01no134_f07.b1 MSMg01no134_f07.b1 CHROMAT_FILE:
MSMg01no134_f07.b1 PHD_FILE: MSMg01no134_f07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:37 2005
(407 letters)
>mm_chr18_81056962_81057768
Length = 807
Score = 745 bits (385), Expect = 0.0
Identities = 397/401 (99%)
Strand = Plus / Plus
Query: 5 gaattctttcacggtacttttacactataactataaaatagttacaaacccacaaacctt 64
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttcacggtacttttagactataactataaaatagttacaaacccacaaacctt 264
Query: 65 attattttcaatgaattaattataaaatgacaaacacaactcccaagtcccacagaagcc 124
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attatactctatgaattaattataaaatgacaaacacaactcccaagtcccacagaagcc 324
Query: 125 ctccatccgcctcctgcccacagtgcccttccctccctccttaaggaatacaatagacac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctccatccgcctcctgcccacagtgcccttccctccctccttaaggaatacaatagacac 384
Query: 185 caccacctcccagatgcctgctcagcatgttctcaaagtcattactaattttcaggatcc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caccacctcccagatgcctgctcagcatgttctcaaagtcattactaattttcaggatcc 444
Query: 245 tcttaccccatctcttctaatctttctgccaaaaggctttggtctctaccctgctaatct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcttaccccatctcttctaatctttctgccaaaaggctttggtctctaccctgctaatct 504
Query: 305 cattcactagatcctgagcccaccttacactccaaacatgccagccttttgtccagaggc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cattcactagatcctgagcccaccttacactccaaacatgccagccttttgtccagaggc 564
Query: 365 accaagatagcttctgctctgccctgaggctgcagccactc 405
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 accaagatagcttctgctctgccctgaggctgcagccactc 605
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 807
Length adjustment: 9
Effective length of query: 398
Effective length of database: 798
Effective search space: 317604
Effective search space used: 317604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no134_f07.g1 MSMg01no134_f07.g1 CHROMAT_FILE:
MSMg01no134_f07.g1 PHD_FILE: MSMg01no134_f07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:38 2005
(657 letters)
>mm_chr18_81230801_81231857
Length = 1057
Score = 1174 bits (607), Expect = 0.0
Identities = 645/663 (97%), Gaps = 12/663 (1%)
Strand = Plus / Minus
Query: 1 gtgatcaaggaggtccccttcctgccgttagctctaatttcctgattatgacaccttctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gtgatcaaggaggtccccttcctgccgttagctctaatttcctgattatgacaccttctc 624
Query: 61 tcctcctacgacgcataatctaagaaatgatatgcttttacaattactgtacatgcagaa 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tcctcatacgacgcataatctaagaaatgatatgcttttacaattactgtacatgcagaa 564
Query: 121 tggtgtgaccaaatggaagttgaatattgctatgttattatgatcagcattattattagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tggtgtgaccaaatggaagttgaatattgctatgttattatgatcagcattattattagt 504
Query: 181 tgagtatcagcaatgtacttgatcctgagatcaaatgaagagagtttgtgagatatacct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tgagtatcagcaatgtacttgatcctgagatcaaatgaagagagtttgtgagatatacct 444
Query: 241 taatttaaccatacttataattctaatataatacatacactctgagaaaatgattatctc 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 443 taatttaaccatacttataattctaatataatacatacaccctgagaaaatgattatctc 384
Query: 301 aaagtggaagacttccttaaaatacatactg---ttt-tttccccccct--ttccaactg 354
||||||||||||||||||||||||||||||| ||| |||| | |||||||||
Sbjct: 383 aaagtggaagacttccttaaaatacatactgctgtttctttc------tatttccaactg 330
Query: 355 caggcttataggaaaaaaatagttaatatttcctataaaatagttcctgttcttcgtgtg 414
|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 caggcttatagggaaggaatagttaatatttcctataaaatagttcctgttcttcgtgtg 270
Query: 415 caaacattcataaaatttaaagtatatcttaaagaaacttagtttctttagtaaaattgt 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 caaacattcataaaatttaaagtatatcttaaagaaacttagtttctttagtaaaattgt 210
Query: 475 cctataatgagccaggtatggtgttgcctgcctacaatcttagcacctgagaggcagaag 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 cctataatgagccaggtatggtgttgcctgcctacaatcttagcacctgagaggcagaag 150
Query: 535 caggtagatcagaaattcaaggtcttcctcaactatataacaaattccaggccagttgag 594
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 caggcagatcagaaattcaaggtcttcctcaactatataacaaattccaggccagttgag 90
Query: 595 gctacccaagactctgactcagaaaaacaaacaaaccccaatgttctgcaaacattccta 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89 gctacccaagactctgactcagaaaaacaaacaaaccccaatgttctgcaaacattccta 30
Query: 655 aaa 657
|||
Sbjct: 29 aaa 27
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space: 677409
Effective search space used: 677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
