BAC Information

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BAC

Clone NameMSMg01-134J19
Chromosome18 (Build37)
Map Location 58,150,908 - 58,151,562
singlet/doubletsinglet
Overlap genenone
Upstream geneMegf10, LOC672445, Prrc1, 1700011I03Rik, 4930511M06Rik, 2210409D07Rik, Slc12a2, 9330166H04Rik
Downstream geneFbn2, Slc27a6, Isoc1, Adamts19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-134J19.T7 (MSMg01no134_j19.b1)MSMg01-134J19.TJ (MSMg01no134_j19.g1)
ACCAG341284AG341285
length1,1951,204
length of high quality
(start - end)
330 (500 - 829)638 (87 - 724)
definitionCHROMAT_FILE: MSMg01no134_j19.b1 PHD_FILE: MSMg01no134_j19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:50:11 2005CHROMAT_FILE: MSMg01no134_j19.g1 PHD_FILE: MSMg01no134_j19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:50:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNGGCAGCTATGGGCGCTXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCATCATTTAAACTGGAATGAGGTTTTCATATCAAGTGACTAAAA
TACTTTTAAAATGATTTTAACAGGTTGAGGACACAACATGATAAAGTATT
TGTCTAGCGTGTATAAGGCTATAGGTTCAATACCCTACTCTACAACAGAA
AAAACAAAAAAAACAAAAACCTCCCAGCATTTTTTGTTGTTGTTAAGAAA
CATATAATGTGTGACTTTAGAAATTTGTAAACAGTTTTAATATATTTATA
CCTTTTGCATAATTGTCTAGTTGTTAGTACTTAAAATGGGAAGGGAACCA
CGTTGTTTGCTTTTCTTCACAATCGTACATCACAAGTTTTTGTTACAAGT
AATTTTCCCAAACATAGTGTCTTAGGGTTTTACTGCCGTGAAGAGCTATT
ATTTTTTCCCCCCCCCTTATAAAGGCAAATATTTAATAAAAAAATGGCTT
ACAATTTTAGAGGTTCAGTCTGTTATCAGTATGGCAGGAAGCATGGCAGC
ATGCAGGTAGACAAAGTGCTGGAGAAGGAACTGAGAGTTCTACATCTTGA
TCCTCAGGCAGCCAGGAGGGGACTGGATTTTTCACAATGGGTAGAACTTG
AGTATAGGAGACCTCAAAGCCCACCCCCACAGTGACACACTTCCTTCAAC
ATGGCCACAATTCCTAGTAGGGCCCCTCCTTATGGGCCAAGCATTCAAAC
ACATGAGTCTGTGGGGGCCAAACCTATTCAAACCAGCACACATAATAAAT
CAATCTGGCTATGTTGGTTCATACATCCAATCCAGTCCTTGAAGGATGAA
ACAAGAAGATTGCTATAAGTTTCAAGCCTGTATTGAGCACATGATGAGTT
AAGACCAGGCCTGAGTTATATAATGAAACCCTGTGTATCTGAAAAAAAAT
TAATCTCCCCATCAACACAAACCCCCCAAAGTAAACAAACATATATCTGT
TTAATTTTAACAAAAAATGGCTTAGGCCGTTTAAAGCTTTCAGGAATTCC
TTACCTGTTATATCAAAAAAAACCCCTTTCTAACCTTTAAAAAAAAATTT
GGTCTCTTTTTTCAAAAGGGCCCCAACAAGGAGGTTTATAAAAAAAAACA
AAAATTTTTTTAATAACCTGGTAATTGCAGCCCGAAATAAAGAGG
NCCCAACTCTTNNNNACTCAAGTGAGGCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTAATCCTGCTCTGTTAGTCA
TGAATTAGAGCTGCCTCCCTATGATGGCAATATTAAACAAGTCCATCCCC
AAGAGAAATGCAGAGGGGAACAAAACCTGCTGCAAAGTATACCCCTCCTC
TCAGGCACTCCAAATACACACCCAGCCCCGGCCACAGAGCACTTAACTCC
GTCCAGCAGCAAGGCTAAGCAACCGAACAACTGAGAGCAACCTGGGAAGA
CCAGGGTGAAATTTATGGAAACCCGCAGTAGAACCTCCAAGCCATGAAGC
CCGAATCTAAAAACAAAGCTGGACCTATCAAAATGAAGGATGAGAAGCAG
ATAAGAAAATAACGAGAAGCAGATGGCAAAGGTATTTTCCATTGATGCCA
TGCCCTTCTGAATAAAAGGCTTGAGTTTTTATGTTCTGAAAACGCTTGTA
TGCAGAGACCTATGAACATTTCACTATGCATTATTCTCTGTCTCTTTCTA
TCTCTGCCTCTCTCTACCTCTGTCTCTCTGTCTGTCTGTCTATCTGTCTC
TGTCTTTCTGTCTGTGTCTGTCTGTCTGTCTGTCTGTCTGTCTCTCTCTC
TCTCTCTCTCTCTCTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTACAG
CTTAACCATTGTTTGTGACATCCTGAGGGGAACGGTCGGCTAAGTTGTGT
TTGTGGAGCACTCCGTTATCTTGAAGGCTACTATGGTATATCAATTCCCG
ACACTGTACTCGGGCAGGCACAGAAAGACCCAAGAGAAGCCCTGATCCTC
ACTCTGTTAGAAGGTGAAATTTGGTGGTCCTGGAACCCCTTGCCTAAAAA
TCTTTTTTTTTCTCTCAATTTTTTTTTTGGAATTGGTCCTCATTTTCTTG
TTTACATTATAACAATTTTTATCTCTCCTATCGTAATCTGTACTTCTTTC
TCTTATTTTAAATTTATTATGTCTATTTTTTAATACTTTTTTTTTTTTTG
TCTCTTTTTTTCCTTTCTTTTTCTTCTTTTCTTTTCTCAATCTTTGTATC
CTCTTTTATTCTATTTTCTTTTCTTTTCTCTCTTCTCTTATAACGTTAAT
TTTGCTTTTTATGATACTTCTCTTCTTATTTCTCTTAATCTTTCTTCTTT
CGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no134_j19.g1 MSMg01no134_j19.g1 CHROMAT_FILE:
MSMg01no134_j19.g1 PHD_FILE: MSMg01no134_j19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:50:11 2005
         (638 letters)



>mm_chr18_58150881_58151918
          Length = 1038

 Score = 1015 bits (525), Expect = 0.0
 Identities = 615/657 (93%), Gaps = 21/657 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgctctgttagtcatgaattagagctgcctccctatgatggcaatattaaacaagtccat 60
           |||||||||||||||||||||||||||||||   | ||||||||||||||| ||||||||
Sbjct: 682 tgctctgttagtcatgaattagagctgcctcaggaggatggcaatattaaataagtccat 623

                                                                       
Query: 61  ccccaagagaaatgcagaggggaacaaaacctgctgcaaagtatacccctcctctcaggc 120
           |||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 622 ccccaaaagaaatgcagaggggaacaaaacctgccgcaaagtataaccctcctctcaggc 563

                                                                       
Query: 121 actccaaatacacacccagccccggccacagagcacttaactccgtccagcagcaaggct 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 562 actccaaatacacacccagccccggccacagagcacttaactccgtccagcatcaaggct 503

                                                                       
Query: 181 aagcaaccgaacaactgagagcaacctgggaagaccagggtgaaatttatggaaacccgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 aagcaaccgaacaactgagagcaacctgggaagaccagggtgaaatttatggaaacccgc 443

                                                                       
Query: 241 agtagaacctccaagccatgaagcccgaatctaaaaacaaagctggacctatcaaaatga 300
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 442 agtagaacctccaagccatgaagcccgaatctaaaaacaaagctgcacctatcaaaatga 383

                                                                       
Query: 301 aggatgagaagcagataagaaaataacgagaagcagatggcaaaggtattttccattgat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 382 aggatgagaagcagataagaaaataacgagaagcagatggcaaaggtattttccattaat 323

                                                                       
Query: 361 gccatgcccttctgaataaaaggcttgagtttttatgttctgaaaacgcttgtatgcaga 420
           |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 322 gccatgcccttctgaaaaaaaggcttgagtttttatgttctgaaaacgcttgtaggcaga 263

                                                                       
Query: 421 gacctatgaacatttcactatgcattattctctgtctctttctatctctgcctctctcta 480
           ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 262 gacctatgaacatttcactatgcgttattctctgtctctttctatctttgcctctctcta 203

                                                                       
Query: 481 cctctgtctctctgtct----------------gtctgtctatctgtctctgtctttctg 524
           |||||||||||||||||                |||||||||||||||||||||||||||
Sbjct: 202 cctctgtctctctgtctctctgtctgtctgtctgtctgtctatctgtctctgtctttctg 143

                                                                       
Query: 525 tctgtgtctgtctgtctgtctgtctgtctgtctctctctctctctctctctctctc---g 581
           |||||||||||||||||||||||||||||  |||||||||||||| | | | | |    |
Sbjct: 142 tctgtgtctgtctgtctgtctgtctgtct--ctctctctctctctgtgtgtgtgtgtgtg 85

                                                                    
Query: 582 tgtgtgtgtgtgtgtgtgtgtgtgtgtctacagcttaaccattgtttgtgacatcct 638
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84  tgtgtgtgtgtgtgtgtgtgtgtgtgtctacagcttaaccattgtttgtgacatcct 28


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 84
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space:   645584
Effective search space used:   645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)