BAC Information

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BAC

Clone NameMSMg01-134K11
Chromosome18 (Build37)
Map Location 18,136,101 - 18,136,799
singlet/doubletsinglet
Overlap genenone
Upstream gene1700001G01Rik, 4921533I20Rik, LOC100040647
Downstream geneLOC100040658
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-134K11.T7 (MSMg01no134_k11.b1)MSMg01-134K11.TJ (MSMg01no134_k11.g1)
ACCAG341316AG341317
length1,2771,236
length of high quality
(start - end)
131 (86 - 216)706 (128 - 833)
definitionCHROMAT_FILE: MSMg01no134_k11.b1 PHD_FILE: MSMg01no134_k11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:50:16 2005CHROMAT_FILE: MSMg01no134_k11.g1 PHD_FILE: MSMg01no134_k11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:50:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTTCTTTTNNNNCCATTCGCGCTATCGACTCCTATGGGAGAGGATCCGC
GGAATTCTTGTAACCTAACAGGACCTCTAAGAATGGCCTCATTTTGAGAG
GATGCCCTTAGGCCCCTTTCCAACTGGATGTAACTGGATTGGTTGGGATG
TTGCCTAAGGCAGACTTCCCCTATTATGAGGAGAAGGAGAAAGGGTAATT
GGGGAGGGATTTGTNTNNNNTNNNNNNNNNNNNNNNNTTTTTTTTTTTTT
TNTTNTTTTTNTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTT
TTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTNTTNT
TTTTTTTTTTTTTTNNNNNNNNNNNCNCNNNNNNTNNNNCNNNNNNNCCC
CCCCCCCCCCTTTTTTTTCCTTCTTCTTTTTTCTTTTTTTTTTTTTTCTT
CTCTTTCTTTTTTTTCCTTCTTCCTTTTTCTTTCTTTCTTTTTTTTTTCT
TTTTTTCTTTCTTTTCTCCTTTTTTTTTCCTTCTTTTTTTCCTTTTTCTC
TCTCTTCTTTCTTCTTTTCTTCTTTTTTTTCCTTTTCTTTTTCTTTCTNC
TCTCTTTTCTTTCTTCTCCTTTCTCTTTCTTTTCTTCTTTTTTTTTTTTC
CTTTTTTCTTTCTTCTCTTCTCTTTTTTTTTTTTCTTTTTCTTTCCTTTC
TTTCTTTTTTTTCTTTTTTCTTTTTTTTCTTCTCTTTTTTTCTTCTCTTC
TTTCTCTCTTTTTTTCTTCTTCCTTCTTCTCTTCTTTTTTTTTTTTTTTT
TCCCTCCTTCTTCTTTTTTTTTTTCTTTTTTTTCTTCCTTTTTTTTTCTT
TTCTTTTTTTTTTCCTTCTTCTTCTTTTTTTTTTTTTTCTTTTTTTTTTC
CTTTTTTCTCCTCTCTCTCTTCTTTTTTCTCCTTTTTCTTTTTCTTTCTC
TTCCTTTTTTTCCCTTTTTTTCTTCTTTTCTTTCTTCTTTTCTTTTTCTT
TTTTCTTTCTTTTTTTTTCCTTCTCTTTCTTTCTTTTCTTCTTTTCTCTC
TTTTNTCTCTTTTTTTTTCTTTTCTCTTCTTTTCTTTTCTTCTTTTTTTC
TCTTCTCTTTTTTTTTTCTTTTTTCTCCTCCTTTCTTCCTTCTTCCCTTC
TTCTCTTTTTTCCTCCCTCCTTCTCTTCTCCTCCTTTTTTTTCTCCTTCT
TTTCTCCTTCTTTTTTTTCTCTTCTTT
NCTATTCTTTTTTNNAGCAGTGAGGCTGGGGXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAAAGACAATTAATACATAT
TAATATTTCACTTCTGTTCTTTTGTTCAGATAATGAAGAAATAATAGACC
TTAATTATATTTGAAAAATAAATTGGACAGTATTTTGGCATTTTTTTTCT
GTCTAATAAGTAAAACTAGATCTGTGAATCCTATGCTTGACAAGTAAACA
AGGAGGCAAAGACAGAGAGAGATTGAGACACATAACCAGAGACAGAGAAA
CACAAAAAGATATCAACCAAAATTTGAAATATTTTAAGTAAAATTGTCTG
CAATCTAATATGACAAAATAACTGCACATGTAGGCATTGCATCTATGTGT
TCTCCTTGATTTTTGATATGGTGAATGAGTGGAAGAGAGCCTCAATTGTA
ATGTGATATATTACTTCTCTTTCACGTTCTCACACAACCTTTAGGAACTT
GTTCTCACATTATTTGTTGTGCAGCTATGGATAACGTCATTCTCTTTCTA
GTTTCTCTTTTATTTACAGCTATGTTTTTCTTCATACAGTTTTACTTTCC
AATAGTCTTTAAATTTTTAAAGTCTTCTTTAATTTCAGAAATTTCTTGCT
CTTTTTTTTCAATATTTTTCATTATAAGGTTAGGTTGATTCTACTTGTAA
AGTATTTGATTCTTCAGAAAAAGAAAAGAGATATGTTTGCATTAGGCTCC
TATTTAATATTCACCTTTCTGGCATTCTTTGTTGCTTTTCCTTTGTAATC
TGCTCATATTTGTACTAGTTGCTAATCCTTGGTATTAAGCATTTGTAATT
AAGCTCAGCTATAATTTTATGCATAGTATTATTATAATTCGGTACAGTTT
TATCTTAAAAAGTATTTTTATTATTCCATTTTTTTTCCCTTGGGAAGGGG
TCCCCCTTAAACTATTCTTAACCCCCACTTATAAATAAGCTGAAAAGAGT
CTATGTTTGACCTTCCCCCCCAACTTCTTTTAAAAAGGTCCCTTATAGAA
GGCTTTTTTCTTTTTAGTACAAAAAAGGGGGGGTGTTGTACCACCGCTCT
GCTCTCTAAAAATAAAATTTATTTCCTCTAAAATAATTTCCCATCGTAAA
AAAATCTTTAATAAGACTTTTTTTTCTCTTTCCAATTCTTACGTTCGTAC
AAAATTAGGCGTAATTTCCATTCTCTATATTTCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no134_k11.g1 MSMg01no134_k11.g1 CHROMAT_FILE:
MSMg01no134_k11.g1 PHD_FILE: MSMg01no134_k11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:50:16 2005
         (706 letters)



>mm_chr18_18135901_18136999
          Length = 1099

 Score = 1189 bits (615), Expect = 0.0
 Identities = 681/707 (96%), Gaps = 9/707 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   agataatgaagaaataatagaccttaattatatttgaaaaataaattggacagtattttg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 899 agataatgaagaaataatagaccttaattatatttgaaaaataaattggacaatattttg 840

                                                                       
Query: 61  gc-attttttttctgtctaataagtaaaactagatctgtgaatcctatgcttgacaagta 119
           || ||||||||||||||||||||||||||      |||||||||||||||||||||||||
Sbjct: 839 gcaattttttttctgtctaataagtaaaa------ctgtgaatcctatgcttgacaagta 786

                                                                       
Query: 120 aacaaggaggcaaagacagagagagattgagacacataaccagagacagagaaacacaaa 179
           ||||||||||||||||||||||||||   ||||| |||||||||||||||||||||||||
Sbjct: 785 aacaaggaggcaaagacagagagagaccaagacatataaccagagacagagaaacacaaa 726

                                                                       
Query: 180 aagatatcaaccaaaatttgaaatattttaagtaaaattgtctgcaatctaatatgacaa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 aagatatcaaccaaaatttgaaatattttaagtaaaattgtctgcaatctaatatgacaa 666

                                                                       
Query: 240 aataactgcacatgtaggcattgcatctatgtgttctccttgatttttgatatggtgaat 299
           ||||||||||||||||||| ||||||||| |||||||||||||  |||||||||||||||
Sbjct: 665 aataactgcacatgtaggcgttgcatctacgtgttctccttgacatttgatatggtgaat 606

                                                                       
Query: 300 gagtggaagagagcctcaattgtaatgtgatatattacttctctttcacgttctcacaca 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gagtggaagagagcctcaattgtaatgtgatatattacttctctttcacgttctcacaca 546

                                                                       
Query: 360 acctttaggaacttgttctcacattatttgttgtgcagctatggataacgtcattctctt 419
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 545 acctttaggaacttgttctcacattatttgttgtgcggctatggataacgtcattctctt 486

                                                                       
Query: 420 tctagtttctcttttatttacagctatgtttttcttcatacagttttactttccaatagt 479
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 485 tctagtttctcttttatttacagctatgtttttcttcatacagttttactttccaacagt 426

                                                                       
Query: 480 ctttaaatttttaaagtcttctttaatttcagaaatttcttgctcttttttttcaatatt 539
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 425 ctttaaatttttaaagtcttctttaatttcagaaatttcttgctattttttttcaatatt 366

                                                                       
Query: 540 tttcattataaggttaggttgattctacttgtaaagtatttgattcttcagaaaaagaaa 599
           |||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||| 
Sbjct: 365 tttccttataaggttaggttgattccacttgtaaagtattcgattcttcagaaaaagaa- 307

                                                                       
Query: 600 agagatatgtttgcattaggctcctatttaatattcacctttctggcattctttgttgct 659
            ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 -gagatatttttgcattaggctcctatttaatattcacctttctggcattctttgttgct 248

                                                          
Query: 660 tttcctttgtaatctgctcatatttgtactagttgctaatccttggt 706
           ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 247 tttcctttgtaatctgctcatatttttactagttgctaatccttggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 706
Length of database: 1099
Length adjustment: 10
Effective length of query: 696
Effective length of database: 1089
Effective search space:   757944
Effective search space used:   757944
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)