CGTTTTTTTNNNNTAGCAATGGGCGCTATAXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTTGTTCAGTTCTGACCCTTATTTTTTAATGGGGTTGT
TTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATT
AGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCCATCTGTTGG
TGGTCTCTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGA
GTTTCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATT
GCTGTTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTT
CCCCACTTTCTCCTCTATAAGTTTGAGTGTCTCTGGTTTTATGTGAAGTT
CTTTGATCCATTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCG
ATTCGCATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCATTTGTT
GAAAATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGA
TCAAGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTC
CATTGGTCTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTACCAC
AATTGCTCTGTAGTAAAGCTTTAGGTCAGGCATGGTGATTCCACCAGAGG
TTCTTTTATCCTTGAGAAGAGTTTTTGCTATCCTAGGTTTTTTGTTATTC
CAGATGAATTTGCAAATTGCTCCTTCTAATTCGTTGAAGAATTGAGTTGG
AATTTTGATGGGTATTGCATTTGATCTGTATATTGCTTTTTGTAATATTT
TTTTTTTTATATATTTGTTCTCTGCTATCCTTGTATTTGTGTATATTTTT
CCTTTTTTCTATATCTCATTTTTCTTCTTATTTTTTTTTTCTTCTTTCAC
ATACTTATTTCACCCATATTTTCTTTTTTTTATTCTTATTTTTCATCATT
CTCTCCCTTACTTATATAATCCTTTTCTTTCTATTTTTTTTATATCTTCT
TTTTTTATTTTATTTCTTTTCTTCTTTACTTTTTTTTTCTTCTCTTTTTC
TCCTTCTATTCTTTTCTCCTCCTCTTTTCTTTTTCTTCT

NCCCAACTATTNNNATATGATGGAGGCTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTTAACAGATGTATCCAGAAAGA
TCTGTTGTCCCTTTCCCTTAATATCCCACCTTACACTGATCTGTGATCCA
CTGCCATGGCTGGGGTCGGTGAGAGGATGAGGCGGGATCTCAGGGCACCC
AGGGGCTTTGCTACGGTTGCCTGTAAATGTCTCCTAAATCCCTAAAGACA
ATGAGTTCTACTAAATAAAAACAAATAAGGTCACCCAAAGACAAAGGGGA
AGCATAGGAACAGGAATTGTACCAAAATTATAGTTATAAGTACTCATAGC
AAAAGGAAGGTAGCTTGTATGTAAGAGTGTATAAAAACAGAAGGGATATT
TCTATGCTGAACAAGAAAGAATGTGCCAAATTCTCTTTACATTGTATATT
CAAAGAGTCTATTACAAATTTGTTTTGACTCATCATTCTCAGTTATAATA
ACTTAAGTTGAGGAAGTGAATAATATGTTTAATAATTTAAACGACTTATA
ATGGAAAATTGCTTAAATAAATCAGTGTAAACACATAATAGGTGTTAGAC
ATTATCATGTTGCAACTATATTTAGATATGGAAACATATTCATGGCATAC
CATTAAATGGAATTACTGAGTAGACACCCATGGAGTGATTCAGTTTTCCA
TAAAAATATTTTATACCTGAAACTATGCATTTGGAACTTTTAGAAGTAAT
TATCTTTACAATTTGTTTTCCAGCATTTTCCGCANAAATTATTTTATATG
ATTCAAAATTCGTTATATAAAAAGAACTCCTCACTATAGTACCAATAGTT
TTCTTTATAAAATAATTTTGTGGTAACCAAATATAGTAAGCGCTAAAGAT
AGAAAATGCTTACAATCTCCAACTGTGGGGTCCCCAGACATAAAAAGGGG
GTCTTTAACCACTACACCTTTCCTTTTTTAATAACATTGGGGAATTATTA
AAAAAATTTTTTCTTTGAGGGGTAAATATTTCTTGAGGGCCTTTTAACCT
TTTTTTTGAAATTTACCTCACAGGAATTTTTTGTCTACCCAAAAAGCCCC
CTTTTATCTTCCTCCCGTTTTTTATTTATTTTGGGGTTATTAATTTTAAT
ACGGGNAATTTCTTCCACGCATAAGCCCGGGGA

Query= MSMg01no134_l01.g1 MSMg01no134_l01.g1 CHROMAT_FILE:
MSMg01no134_l01.g1 PHD_FILE: MSMg01no134_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:50:21 2005
         (754 letters)



>mm_chr18_30788954_30790106
          Length = 1153

 Score = 1365 bits (706), Expect = 0.0
 Identities = 741/753 (98%), Gaps = 1/753 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtatccagaaagatctgttgtccctttcccttaatatcccaccttacactgatctgtga 60
           |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct: 952 tgtatccagaaagatctgttgtccctttccctgaatatcccaccttacactgatctgtca 893

                                                                       
Query: 61  tccactgccatggctggggtcggtgagaggatgaggcgggatctcagggcacccaggggc 120
           |||||||||||||||||||||||| |||||||||||||||||  ||||||||||||||||
Sbjct: 892 tccactgccatggctggggtcggtaagaggatgaggcgggat-gcagggcacccaggggc 834

                                                                       
Query: 121 tttgctacggttgcctgtaaatgtctcctaaatccctaaagacaatgagttctactaaat 180
           ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 tttgctaccattgcctgtaaatgtctcctaaatccctaaagacaatgagttctactaaat 774

                                                                       
Query: 181 aaaaacaaataaggtcacccaaagacaaaggggaagcataggaacaggaattgtaccaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 aaaaacaaataaggtcacccaaagacaaaggggaagcataggaacaggaattgtaccaaa 714

                                                                       
Query: 241 attatagttataagtactcatagcaaaaggaaggtagcttgtatgtaagagtgtataaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 attatagttataagtactcatagcaaaaggaaggtagcttgtatgtaagagtgtataaaa 654

                                                                       
Query: 301 acagaagggatatttctatgctgaacaagaaagaatgtgccaaattctctttacattgta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 acagaagggatatttctatgctgaacaagaaagaatgtgccaaattctctttacattgta 594

                                                                       
Query: 361 tattcaaagagtctattacaaatttgttttgactcatcattctcagttataataacttaa 420
           ||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 tattcaaagagtcgaaaacaaatttgttttgactcatcattctcagttataataacttaa 534

                                                                       
Query: 421 gttgaggaagtgaataatatgtttaataatttaaacgacttataatggaaaattgcttaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 gttgaggaagtgaataatatgtttaataatttaaacgacttataatggaaaattgcttaa 474

                                                                       
Query: 481 ataaatcagtgtaaacacataataggtgttagacattatcatgttgcaactatatttaga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 ataaatcagtgtaaacacataataggtgttagacattatcatgttgcaactatatttaga 414

                                                                       
Query: 541 tatggaaacatattcatggcataccattaaatggaattactgagtagacacccatggagt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tatggaaacatattcatggcataccattaaatggaattactgagtagacacccatggagt 354

                                                                       
Query: 601 gattcagttttccataaaaatattttatacctgaaactatgcatttggaacttttagaag 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 gattcagttttccataaaaatattttatacctgaaactatgcatttggaacttttagaag 294

                                                                       
Query: 661 taattatctttacaatttgttttccagcattttccgcanaaattattttatatgattcaa 720
           |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 293 taattatctttacaatttgttttccagcattttctgcaaaaattattttatatgattcaa 234

                                            
Query: 721 aattcgttatataaaaagaactcctcactatag 753
           |||||||||||||||||||||||||||||||||
Sbjct: 233 aattcgttatataaaaagaactcctcactatag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 754
Length of database: 1153
Length adjustment: 10
Effective length of query: 744
Effective length of database: 1143
Effective search space:   850392
Effective search space used:   850392
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)