Query= MSMg01no134_m19.b1 MSMg01no134_m19.b1 CHROMAT_FILE:
MSMg01no134_m19.b1 PHD_FILE: MSMg01no134_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:50:34 2005
(717 letters)
>mm_chr18_57215011_57216127
Length = 1117
Score = 1294 bits (669), Expect = 0.0
Identities = 705/721 (97%), Gaps = 8/721 (1%)
Strand = Plus / Plus
Query: 1 taagtgtcaaaagttcagaacctttgaa----gccttttaaaaggtaaaagagacatgtg 56
||||||||||||||||||||| |||||| | ||||||||||||||||| |||||
Sbjct: 201 taagtgtcaaaagttcagaacttttgaagaggg----ttaaaaggtaaaagagagatgtg 256
Query: 57 ttgagtcatgtataacattgtttctggcagaataatagcagactttctacagaaattcaa 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ttgagtcatgtataacattgtttctggcagaataatagcagactttctacagaaattcaa 316
Query: 117 aagggcataaaggcacaatatgctatattttaagcaccataagaaagcaactggaacata 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 aagggcataaaggcacaatatgctatattttaagcaccataagaaagcaactggaacata 376
Query: 177 tgttactgtatctaacaaaatcatcagtcagaaccaaaggaggaacaacttccaagataa 236
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tgttactgtttctaacaaaatcatcagtcagaaccaaaggaggaacaacttccaagataa 436
Query: 237 gaaactatcgaaattagtgatagcaaatacagcggcattacagaacaaaatggaatcctg 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gaaactatcgaaattagtgatagcaaatacagcggcattacagaacaaaatggaatcctg 496
Query: 297 tacacagaaggagaaagaagataatctttcatgaaagcatggcagaaataattaaccgtg 356
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 497 tacacagaaggagaaagaagataaacagtcatgaaagcatggcagaaataattaaccgtg 556
Query: 357 ttagaaatgtacacgggcaaacaaggaccccaaagcatttgacagtaagcttttgacctc 416
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ttagaaatgtagacgggcaaacaaggaccccaaagcatttgacagtaagcttttgacctc 616
Query: 417 aaaaattaatagggaaaaagaaggaaatgtgaattattcaaaacaaccataaggaaagag 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 aaaaattaatagggaaaaagaaggaaatgtgaattattcaaaacaaccataaggaaagag 676
Query: 477 aaggatcaaatgaccagaagtagtatacgcctttcagtaattaccccaaatgtaaagtta 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 aaggatcaaatgaccagaagtagtatacgcctttcagtaattaccccaaatgtaaagtta 736
Query: 537 cccaactaaaggatacagattggcaaactggatttaaagcaagacccaacaatttattgt 596
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 tccaactaaaggatacagattggcaaactggatttaaagcaagacccaacaatttattgt 796
Query: 597 ctgtaagaaacacaactaccagcaaagacaagttgaaagaggaacacactgaaagtgaaa 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 ctgtaagaaacacaactaccagcaaagacaagttgaaagaggaacacactgaaagtgaaa 856
Query: 657 gatataaaatgatgtctgttttagttttgaaagatctatgtcattatttttaatgatgtg 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 gatataaaatgatgtctgttttagttttgaaagatctatgtcattatttttaatgatgtg 916
Query: 717 t 717
|
Sbjct: 917 t 917
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 717
Length of database: 1117
Length adjustment: 10
Effective length of query: 707
Effective length of database: 1107
Effective search space: 782649
Effective search space used: 782649
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no134_m19.g1 MSMg01no134_m19.g1 CHROMAT_FILE:
MSMg01no134_m19.g1 PHD_FILE: MSMg01no134_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:50:34 2005
(706 letters)
>mm_chr18_57369630_57370735
Length = 1106
Score = 1303 bits (674), Expect = 0.0
Identities = 695/702 (99%)
Strand = Plus / Minus
Query: 1 cacctttagctgtaattaaaagcagaagctgcccatagcttatgaagataccagctcccc 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 902 cacctttagttgtaattaaaagcagaagctgcccatagcttatgaagataccagctcccc 843
Query: 61 agtgtgtcctgtatacggtcaagctaagtcagagcatgctgacccaagggtcagcatcct 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 agtgtgtcctgtatactgtcaagctaagtcagagcatgctgacccaagggtcagcatcct 783
Query: 121 tcggtctctacgcacatatgtgatcttgtaggtggcattcctttgtaaggctgtacagct 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 782 tcggtctctacgcacatatgtgatcttgtaggtgacattcctttgtaaggctgtacagct 723
Query: 181 ctctcctgttatctgtttaaatttagatatggacactcttgaagccaacaacttgctgtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 ctctcctgttatctgtttaaatttagatatggacactcttgaagccaacaacttgctgtc 663
Query: 241 tgcaaacacacaagatccagttaaaatgcactggaaggtgtttgtgacagtacagagcaa 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 662 tgcaaacacacaagatccagttaaaatgcactggaaggtgggggtgacagtacagagcaa 603
Query: 301 gctctatactgcacacactgtggcaaagggtatcactgtgacaaaggacttccacattct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 gctctatactgcacacactgtggcaaagggtatcactgtgacaaaggacttccacattct 543
Query: 361 gagtgctggtatccatcataattatgcctccatgagaaggcttggtcttacttgcctcat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 gagtgctggtatccatcataattatgcctccatgagaaggcttggtcttacttgcctcat 483
Query: 421 gggctgatggcatttaggcttgaatcacctgactacttaaatttatcctcactcaaggta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gggctgatggcatttaggcttgaatcacctgactacttaaatttatcctcactcaaggta 423
Query: 481 ctaaagctatttgcaattatgttcttatgtcttgagacattttggaaagtggatgttaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ctaaagctatttgcaattatgttcttatgtcttgagacattttggaaagtggatgttaaa 363
Query: 541 tacctttaaagtgaaacagaactcctttgctataaagggagaaagatgtgatggaaaatt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tacctttaaagtgaaacagaactcctttgctataaagggagaaagatgtgatggaaaatt 303
Query: 601 taaaatctggattattttaagaaatttcttgagctaacatttcagcaaagtctgaaacaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 taaaatctggattattttaagaaatttcttgagctaacatttcagcaaagtctgaaacaa 243
Query: 661 aacgtgggtccgttttttgacaaaacaaaacatagcaaaaca 702
||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 242 aacatgggtccgttttttgacaaaacaaaacatagcaaaaca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 706
Length of database: 1106
Length adjustment: 10
Effective length of query: 696
Effective length of database: 1096
Effective search space: 762816
Effective search space used: 762816
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
