Query= MSMg01no135_o09.b1 MSMg01no135_o09.b1 CHROMAT_FILE:
MSMg01no135_o09.b1 PHD_FILE: MSMg01no135_o09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:07 2005
(560 letters)
>mm_chr18_81012793_81013750
Length = 958
Score = 1048 bits (542), Expect = 0.0
Identities = 555/560 (99%), Gaps = 2/560 (0%)
Strand = Plus / Plus
Query: 1 attactgtttactctggagtcagtgctttggcagtcctttaagaatatgtgcacagtggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attactgtttactctggagtcagtgctttggcagtcctttaagaatatgtgcacagtggc 260
Query: 61 aaaacaaaacaaacaaaaaaatacaaaccacaaaaccacctcccgatgctggtatctcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaacaaaacaaacaaaaaaatacaaaccacaaaaccacctcccgatgctggtatctcac 320
Query: 121 tgaccaagtcagtgaggcagagctctatattcccttcacagattccaggagtcaaaggac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaccaagtcagtgaggcagagctctatattcccttcacagattccaggagtcaaaggac 380
Query: 181 agtgtgtagccctctttttaaagactaaatggggtgagtaattgtgatgaacagcatcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtgtgtagccctctttttaaagactaaatggggtgagtaattgtgatgaacagcatcat 440
Query: 241 gcatttctattaatacttttttaactttaaaatgtgtcgtatataacatacaaatgagtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcatttctattaatacttttttaactttaaaatgtgtcgtatataacatacaaatgagtg 500
Query: 301 tctacatgtccttgagaagatacccagctttacccgactgagatggctctgtcctgggac 360
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 501 tctacatgtccttgagaagatacccagctttacccgaatgagatggctctgtcctgggac 560
Query: 361 actataggtgccctgttcactggttagggtttcatggtcacatgaagccatccctgggaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actataggtgccctgttcactggttagggtttcatggtcacatgaagccatccctgggaa 620
Query: 421 tcagtgccttcttcggtttgcttggctagtacctgatcctcctcttcctcctcttccttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcagtgccttcttcggtttgcttggctagtacctgatcctcctcttcctcctcttccttt 680
Query: 481 tgtatgctcacaagtgcctgtgtgcatgagtgtatgcgtgcgtgagagagagagagagat 540
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
Sbjct: 681 tgtatgctcacaagtgcctgtgtgcatgtgtgtgtgcgtgcgtgagagagagagaga--t 738
Query: 541 aaataatatggtagggtttt 560
||||||||||||||||||||
Sbjct: 739 aaataatatggtagggtttt 758
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 958
Length adjustment: 10
Effective length of query: 550
Effective length of database: 948
Effective search space: 521400
Effective search space used: 521400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no135_o09.g1 MSMg01no135_o09.g1 CHROMAT_FILE:
MSMg01no135_o09.g1 PHD_FILE: MSMg01no135_o09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:07 2005
(262 letters)
>mm_chr18_81193916_81194577
Length = 662
Score = 480 bits (248), Expect = e-140
Identities = 257/260 (98%)
Strand = Plus / Minus
Query: 1 acttttgtgccatcttttcctcttctctgatttgacaccaagaaattgaaagcctgtacg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 acttttgtgccatcttttcctcttctctgatttgacaccaagaaattgaaagcctgtacg 401
Query: 61 tatgtcttgcaaaagaccatgcgttgcaattgagtacaaagcaagcaagccaaaaaataa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tatgtcttgcaaaagaccatgcgttgcaattgagtacaaagcaagcaagccaaaaaataa 341
Query: 121 atagaaagaaggtgggactgagttttagaaaccagactgtgaagctttgcacgtcctctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 340 atagaaagaaggtgggactgagttttagaaaccagactgtgaagctttgcacgtcctttt 281
Query: 181 tccagtcagcgcagagcaatgggcatctctcaggacaactggcacaagcgctgcaagacc 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tccagtcagcgcggagcaatgggcatctctcaggacaactggcacaagcgctgcaagacc 221
Query: 241 gggtgttggaggtggggagg 260
||| ||||||||||||||||
Sbjct: 220 gggggttggaggtggggagg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 262
Length of database: 662
Length adjustment: 9
Effective length of query: 253
Effective length of database: 653
Effective search space: 165209
Effective search space used: 165209
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
