Query= MSMg01no136_i20.b1 MSMg01no136_i20.b1 CHROMAT_FILE:
MSMg01no136_i20.b1 PHD_FILE: MSMg01no136_i20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:58 2005
(612 letters)
>mm_chr18_68745476_68746487
Length = 1012
Score = 1118 bits (578), Expect = 0.0
Identities = 605/616 (98%), Gaps = 4/616 (0%)
Strand = Plus / Plus
Query: 1 taattctattggctaagaccgctatctgttgtggcttgaatgtgtttgaaatccacaggc 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 taattatattggctaagaccgctatctgttgtggcttgaatgtgtttgaaatccacaggc 256
Query: 61 tcatgtgtttgaaatcttgcttttcagatgatagtgctgcttggaaaggttgtgaaacct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tcatgtgtttgaaatcttgcttttcagatgatagtgctgcttggaaaggttgtgaaacct 316
Query: 121 ctaagagttagatcctgatggagacaaggggtcagtggggatttcccatggctctttaca 180
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 317 ctaagagttagatcctgatggagacaaggggtcagtggggatagcccatggctctttaca 376
Query: 181 gtctggccctgcttcctggtcttcctctgcttcctgactgttgaaacaatgtgtccgacc 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 377 gtctggccctgcttcctggtcttcctctgcttcctgactgttgaaacaatgtgtcccacc 436
Query: 241 agactcatgctctttcctcttcatgatg----gattgtaccactttgtaaccttaaactg 296
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 437 agactcatgctctttcctcttcatgatggattgattgtaccactttgtaaccttaaactg 496
Query: 297 gaataaacaccttttctattatgttgttgtggccgttttattgcatcaatgcctaaagta 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gaataaacaccttttctattatgttgttgtggccgttttattgcatcaatgcctaaagta 556
Query: 357 actaaagcatatcttttggtacaatgaaagcagcacacatagagatatgccaagcatgat 416
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 557 actaaagcatatcttttggtacaatgaaagcagcacacatagagacatgccaagcatgat 616
Query: 417 gtgtgtggataggggagtgtgccttaccaaaaaatagtttggtattctggagtatgatgg 476
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 617 gtgtgtggataggggagtgtgccttaccaaagaatagtttggtattctggagtatgatgg 676
Query: 477 attggagcatgaaagcagaagggtgaataggaaccagcccaccaagggtactaactttca 536
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 677 attggagcatgaaagcagaagggtgaataggaaccagcccaccaagggcactaactttca 736
Query: 537 taccaaagagctttgatattttatcatgggatgcttttaaataggaagctcagatttata 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 taccaaagagctttgatattttatcatgggatgcttttaaataggaagctcagatttata 796
Query: 597 tttgctagctctttta 612
||||||||||||||||
Sbjct: 797 tttgctagctctttta 812
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space: 603204
Effective search space used: 603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no136_i20.g1 MSMg01no136_i20.g1 CHROMAT_FILE:
MSMg01no136_i20.g1 PHD_FILE: MSMg01no136_i20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:58 2005
(602 letters)
>mm_chr18_68875265_68876262
Length = 998
Score = 841 bits (435), Expect = 0.0
Identities = 468/483 (96%), Gaps = 8/483 (1%)
Strand = Plus / Minus
Query: 124 atctaagtagagacatacacac----acatacatacatacatgcatacacagtaaagaca 179
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 998 atctaagtagagacatacacacacatacatacatacatacatgcatacacagtaaagaca 939
Query: 180 acattcacctcccacctttcttctatttatatgtcattaaatttccaagggaataaatca 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 938 acattcacctcccacctttcttctatttatatgtcattaaatttccaagggaataaatca 879
Query: 240 ctgatattttcccaagaaaaagagtcctataaaaatactaaaataaaaataaaattacta 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878 ctgatattttcccaagaaaaagagtcctataaaaatactaaaataaaaataaaattacta 819
Query: 300 aaatataattacaaataagaggcgctccacaccagtggtctagtcactctgggtttggtt 359
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 818 aaatataattacaaataagaggcgctccacaccagtggtct----actctgggtttggtt 763
Query: 360 gttatcatttgtttgtttactactgggacaaatgctgaaatctgactagtactattggct 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 762 gttatcatttgtttgtttactactgggacaaatgctgaaatctgactagtactactggct 703
Query: 420 aaataatatggcaggagtgattgtcttcttgccttaaactacctaggttgccactttcac 479
||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 702 aaataatatagcagaagtgattgtcttcttgccttaaactacctaggctgccactttcac 643
Query: 480 gttgaaggtcatgggtttagaagatggttactccgcactgcacctatctggtggtctttg 539
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 642 gttgaaggtcatgggtttagaagatggttagtccacactgcacctatctggtggtctttg 583
Query: 540 cttctactgtgaccatttctcagaaggatgagtagaggttaaatgactttgcccaaaaaa 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 582 cttctactgtgaccatttctcagaaggatgagtagaggttaaatgactttgcccaaacaa 523
Query: 600 caa 602
|||
Sbjct: 522 caa 520
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 998
Length adjustment: 10
Effective length of query: 592
Effective length of database: 988
Effective search space: 584896
Effective search space used: 584896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
