Query= MSMg01no137_c22.b1 MSMg01no137_c22.b1 CHROMAT_FILE:
MSMg01no137_c22.b1 PHD_FILE: MSMg01no137_c22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:47 2005
(589 letters)
>mm_chr18_80341393_80342383
Length = 991
Score = 1050 bits (543), Expect = 0.0
Identities = 579/593 (97%), Gaps = 6/593 (1%)
Strand = Plus / Plus
Query: 1 aaagacaagacggacaaaaagctctagtaccagtcatgtcaacaggaccaggaaggaagc 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 aaagacaagacggacaaaaagctctagtaccagtcatgtcaacaggagcaggaaggaagc 260
Query: 61 ttagaagacgtctccacaagccaaagccaacaaaatctaggcaccagaaaaatggcagca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttagaagacgtctccacaagccaaagccaacaaaatctaggcaccagaaaaatggcagca 320
Query: 121 atagattctaacctgtggcagtttccctaagttcctcttatgacaga----acctgaaac 176
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 atagattccaacctgtggcagtttccctaagttcctcttatgacagacagaacctgaaac 380
Query: 177 agctaccagaaatgctgggcagaactaaccaaaccgatcaagtatggcagaagcaatgcc 236
|||||||||||||||||| ||||||||||||| | |||| ||||||||||||||||||||
Sbjct: 381 agctaccagaaatgctggacagaactaaccaa-ctgatcgagtatggcagaagcaatgcc 439
Query: 237 atataaactccaagactatatggcaaaaacagcgcctttcattcctaagaactcgggtgg 296
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 440 atataaactccaagactagatggcaaaaacagcgcctttcattcctaagaactggggtgg 499
Query: 297 agttacagctacatttatacacacacccaagaccacgtgggaattccacaccctccaaca 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 500 agttacagctacatttatacacacacccaagaccacgtgggaattccacaccctc-aaca 558
Query: 357 tggagtaaagggacttctgcaaagtgtggccccagctcccaagtcaccactggttctcag 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tggagtaaagggacttctgcaaagtgtggccccagctcccaagtcaccactggttctcag 618
Query: 417 tctcccaacacagcagggagtgagttgtctccactttatattccgtataaatttctaatt 476
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 619 tctcccaacacagcagggagtgagttatctccactttatattccgtataaatttctaatt 678
Query: 477 cagacttgtgaatctgttaacaaaatgttctgctctacaaagtgatctcaaggtgatcca 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 cagacttgtgaatctgttaacaaaatgttctgctctacaaagtgatctcaaggtgatcca 738
Query: 537 gaacaataaaagctaaaaaatgtgataaagaatgggacacagacttcacatta 589
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 gaacaataaaagctaaaaaatgtgataaagaatgggacacagacttcacatta 791
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 991
Length adjustment: 10
Effective length of query: 579
Effective length of database: 981
Effective search space: 567999
Effective search space used: 567999
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no137_c22.g1 MSMg01no137_c22.g1 CHROMAT_FILE:
MSMg01no137_c22.g1 PHD_FILE: MSMg01no137_c22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:47 2005
(475 letters)
>mm_chr18_80501251_80502125
Length = 875
Score = 636 bits (329), Expect = 0.0
Identities = 336/339 (99%), Gaps = 2/339 (0%)
Strand = Plus / Minus
Query: 6 gaattccttcttttatttctcctggaaagtgaagaagaccagtgacaacatgggccccat 65
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 337 gaattccttcttttatttctcctgggaagtgaagaagaccagtgacaacatgggccccat 278
Query: 66 gtcagtagaccttgttttctgaagtgcttggttgtccaaagtgagcctgtcttggtcact 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gtcagtagaccttgttttctgaagtgcttggttgtccaaagtgagcctgtcttggtcact 218
Query: 126 agttgtgagttgtgtagcagaaattattaaaaccccagcctggggtttcaatagcctttg 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 agttgtgagttgtgtagcagaaattattaaaaccccagcctggggtttcaatagcctttg 158
Query: 186 gttattgagttcctggatgagagacacactcacagcctttatatatatacagtacaatag 245
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 157 gttattgagttcctggatgagagacacactcacagcctt--tatatatacagtacaatag 100
Query: 246 ctgggcagctgcctaccctccgtgttgttagaatctatttccctattgataatccaagtt 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99 ctgggcagctgcctaccctccgtgttgttagaatctatttccctattgataatccaagtt 40
Query: 306 attactttctatgttacatctgggctgctcttagctcta 344
|||||||||||||||||||||||||||||||||||||||
Sbjct: 39 attactttctatgttacatctgggctgctcttagctcta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space: 402225
Effective search space used: 402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
