Query= MSMg01no137_d07.b1 MSMg01no137_d07.b1 CHROMAT_FILE:
MSMg01no137_d07.b1 PHD_FILE: MSMg01no137_d07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:49 2005
(436 letters)
>mm_chr18_22076541_22077378
Length = 838
Score = 758 bits (392), Expect = 0.0
Identities = 426/438 (97%), Gaps = 2/438 (0%)
Strand = Plus / Plus
Query: 1 gagtccaacagttacttcagtgagaaaatatcctacccagcatgctcaaattttattcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagtccaacagttacttcagtgagaaaatatcctacccagcatgctcaaattttattcta 260
Query: 61 accagatgtgtgatgcaataagaaaataaaaattcagataggacaatggaaacctagtgt 120
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accagatgtgtgacgcaataaaaaaataaaaattcagataggacaatggaaacctagtgt 320
Query: 121 agcatttaactttccagtgcctactagaaagatggcgtatcctaacaaggttgtctttac 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 agcatttaactttccagtgcctactagaaagatggtgtatcctaacaaggttgtctttac 380
Query: 181 tgaattttccctgagcaactgtatgagatgttattattcttgctttacagaaaagggagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaattttccctgagcaactgtatgagatgttattattcttgctttacagaaaagggagt 440
Query: 241 caaaacaatgactcattaaatagggaaattcatagttttgggaaattgccacaacaatat 300
||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 441 caaaacaatgagacattaaatagggaaattcatagttttggaaaatggccacaacaatat 500
Query: 301 ttttagtcaaatatgtttttt--aaaaaagcttatcattccatatacaggtcaagtctat 358
||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 501 ttttagtcaaatatgttttttttaaaaaagcttttcattccatatacaggtcaagtctat 560
Query: 359 ttgctcctttcatagttgcttaatatatttgtggtttatccagtcagtctaatattgtag 418
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 561 ttgctcctttcatagttgcttaatatatttgtggtttatccagccagtcaaatattgtag 620
Query: 419 aaataatgctgtgacttt 436
||||||||||||||||||
Sbjct: 621 aaataatgctgtgacttt 638
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 838
Length adjustment: 9
Effective length of query: 427
Effective length of database: 829
Effective search space: 353983
Effective search space used: 353983
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no137_d07.g1 MSMg01no137_d07.g1 CHROMAT_FILE:
MSMg01no137_d07.g1 PHD_FILE: MSMg01no137_d07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:49 2005
(594 letters)
>mm_chr18_22225905_22226898
Length = 994
Score = 1125 bits (582), Expect = 0.0
Identities = 591/594 (99%)
Strand = Plus / Minus
Query: 1 agtattaaacaaaattgttgaaacgtcttctccattacttatatttaagttttattttct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 agtattaaacaaaattgttgaaacgtcttctccattacttatatttaagttttattttct 735
Query: 61 ggtttcaaacctatggggaaaatgtgaaaccataagaactaagtagcagatttatcaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 ggtttcaaacctatggggaaaatgtgaaaccataagaactaagtagcagatttatcaaat 675
Query: 121 ggttattttgtaaagagtggatgtatgttatttctctccttttgcttgtcaatgtcacga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 674 ggttattttgtaaagagtggatgtatgttatttctctccttttgcttgtcaatgtcatga 615
Query: 181 gttatgattcaaagtttcctggtgttttcccattctgtgactaaagcaattctattgtgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 614 gttatgattcaaagtttcctggtgttttcccattctgtgactaaagcaattctatcgtgt 555
Query: 241 catgattatttatctgaatattagaaacactgggcttgatttatatctgatttgctatgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 catgattatttatctgaatattagaaacactgggcttgatttatatctgatttgctatgt 495
Query: 301 tttatcaggattctatatcagatttaaaaatgacagaagaatgccctattattttatact 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tttatcaggattctatatcagatttaaaaatgacagaagaatgccctattattttatact 435
Query: 361 ctgttagtcagtgctcactatggaaactacataaagtaaaatgcaattcctttcttattt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ctgttagtcagtgctcactatggaaactacataaagtaaaatgcaattcctttcttattt 375
Query: 421 gtataaataaaggaaatctcctcaactcagtcattttctgtgctttttctaggtagatga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 gtataaataaaggaaatctcctcaactcagtcattttctgtgctttttctaggtagatga 315
Query: 481 cttgaaaagactgtttgatcaatattgctggagacaaagaaaatatgaaaatgagtacct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 cttgaaaagactgtttgatcaatattgctggagacaaagaaaatatgaaaatgagtacct 255
Query: 541 ggaagcattttctaattattattccttagtaagtggaatgttccctttctcccc 594
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 254 ggaagcattttctaatttttattccttagtaagtggaatgttccctttctcccc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space: 574656
Effective search space used: 574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
