BAC Information

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BAC

Clone NameMSMg01-137H19
Chromosome18 (Build37)
Map Location 76,247,479 - 76,247,719
singlet/doubletsinglet
Overlap geneZbtb7c
Upstream geneDym, LOC628356, EG667777, Smad7, Gm672, 4833419G08Rik
Downstream geneLOC668184, Smad2, LOC668188, EG639576, EG664805, LOC620139, Ier3ip1, Hdhd2, Katnal2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-137H19.T7 (MSMg01no137_h19.b1)MSMg01-137H19.TJ (MSMg01no137_h19.g1)
ACCAG343398AG343399
length715713
length of high quality
(start - end)
510 (75 - 584)242 (77 - 318)
definitionCHROMAT_FILE: MSMg01no137_h19.b1 PHD_FILE: MSMg01no137_h19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:11 2005CHROMAT_FILE: MSMg01no137_h19.g1 PHD_FILE: MSMg01no137_h19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCANGAGGNGCGGCGGA
ATTCAATCTGTTTCCCAATAAATGAAGTTTCTAAATTTTATTCATAGAGG
ATATGTCTCTCTAGTTTTCTTGCAATACCTTGTCTGGTATTAGGACAATC
CACTTTATAGATTGTGCTAGAAAGAATTCTGCTCATTGGAATAATATGCA
AAATCGTTATAATTTTTTTAAATCATAAAATTTACCAGCGATGCCATCTG
GTCTTAGATTTTTTTTAATGAAATATGTTTCAAATACATATTTAATTACC
TTAATAGATATATGTCTGTTAATTTTATCATTTTCTTTAGCTTTTGCTCC
AAGGTTTCAATGTTCTGCTGCTAGGCATCTAGTGGTTTTGGAGGAAGTTG
GTTATACCTGCTGACGAGTAAATTTTTTATCATTATGAAATTACCTTGGT
AATATTTTTGCTCTGAAGTCTACCTTGTCTAAAATTAATGTGGTTATGCT
TTTTTAATTGCGATTTTTTATAGCATGGTACACATTTTGATCATGTATTT
ATTAAAAGAAATAATTAAAAGTAGGCTTATGTAACCAGAAATAGAATAGT
CTTTTTATTCAGTCTGACAATCATCACGTCTTACTTGCGGCGCCTGGAAC
ATTTATACTTAAATGTCATTATTGATTTTTCCATGTAAATCCCCTGTCCA
CTGTTGTCTGTCAAN
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXAACAAGACAACTAGGCATCTTATTATTCACTTGCTCC
CTTCCAGCTCTGACCTTAAGAGTACTCTTAACCTTCCTCCTCCAGCTTGC
TAATGGGGAAATAAATCTTGGGAGAGTATCTTAAATTCTTCTTTATCACA
GACTGTATCACCGAGATAATAAGACCAGCCTTCAGAGTAACCATTAAGCC
ACTTTTGGTGTGGTCATCACTTATGATTTTTGAGCCTTAATTGCTAGACA
GACACTTTAAGTGGGAATTCTTGCNATTGAGCCCAGTCATTAAAACATCA
AAAACTGTTATCTGGGCCCCCTATTTCAGTTAGACATTACATTATTTTAA
TAAGGGGGCTGCATTTCTTGTCACAAGCTCTGGTAATGGAGGCGGAAGCA
ACCCTGTGGGGAACGAGGGGGAGGGGAATTGACTTGCCTTTGGAAAACAA
GGTCGCAAATCAAGCTGGAGCCTTAGCTGGAGGAGGCTGAGGGAGAAAGG
CCCTGCCTAGAGGGTTGGAGGACTGAAAGCACCACGCAAGTCCCGGCTGG
GGACTAGGGAAAGCCAGTGGTCCTGCGTGCTCTGACTTTCTTGCCCACCC
TTTATATTTTTATGATCTGTCCCCTACCCTTTGCGCAGTGACCTTGTTCC
TACATGTTAGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no137_h19.g1 MSMg01no137_h19.g1 CHROMAT_FILE:
MSMg01no137_h19.g1 PHD_FILE: MSMg01no137_h19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:11 2005
         (242 letters)



>mm_chr18_76247279_76247920
          Length = 642

 Score =  435 bits (225), Expect = e-126
 Identities = 237/245 (96%), Gaps = 8/245 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggcatcttattattcacttgctcccttccagctctgaccttaagagtactcttaaccttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggcatcttattattcacttgctcccttccagctctgaccttaagagtactcttaaccttc 382

                                                                       
Query: 61  ctcctccagcttgctaatggggaaataaatcttgggagagtatcttaaattcttctttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcctccagcttgctaatggggaaataaatcttgggagagtatcttaaattcttctttat 322

                                                                       
Query: 121 cacagactgtatcaccgagataataagaccagccttcagagtaaccattaagccac---- 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct: 321 cacagactgtatcaccgagataataagaccagccttcagagtaaccattaagccacaaaa 262

                                                                       
Query: 177 ttttggtgtggtcatcacttatgatttttgagccttaattgctagacagacactttaagt 236
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ----ggtgtggtcatcacttatgatttttgagccttaattgctagacagacactttaagt 206

                
Query: 237 gggaa 241
           |||||
Sbjct: 205 gggaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)