BAC Information

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BAC

Clone NameMSMg01-138I10
Chromosome18 (Build37)
Map Location 40,467,676 - 40,467,925
singlet/doubletsinglet
Overlap geneKctd16
Upstream geneArhgap26, Nr3c1, Pabpc2, LOC100041939, Yipf5
Downstream geneEG225416
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-138I10.T7 (MSMg01no138_i10.b1)MSMg01-138I10.TJ (MSMg01no138_i10.g1)
ACCAG344170AG344171
length688681
length of high quality
(start - end)
387 (47 - 433)355 (80 - 434)
definitionCHROMAT_FILE: MSMg01no138_i10.b1 PHD_FILE: MSMg01no138_i10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:55:35 2005CHROMAT_FILE: MSMg01no138_i10.g1 PHD_FILE: MSMg01no138_i10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:55:35 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
GGGGGGCTCATAATTTGCGGCGCTAAACGACTCCTATTCGAAGAGGATCC
GCGGAATTCTCTGAACTCACTGTCCTTTCAGGTCCACATTTGCTCTGGCT
CTGGCAACTGACTGAACCAAACAATTAGGCTCATACCTAGAACTTTGGAA
ATGGTAATGGAGTTGATAACACACCCTAACAGAAAGAGGAATGCTCCACT
CACTAGTACACTTTCACTAGAGCCTCACCCTGTCAGCAGTTTAGGAATTT
GTAAAGCCAATCTGGACAATATTTAAATGGTTTGGAATTTCTACTTCATG
TTTTTTTTTTTTTTTTTTTGAGACAGGGTTTCTCTGTATAGCCCTGGCTG
TCCTGGCACATTGGATTTTATAACAGACTTTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTAACACTTCTCCTGTGATTGCCGTAACTTGCAATCT
AGTGGGCTTATGTTTGATTCCTGTAATCTTTTATTCTAATTCTTTTTCCT
TTTGATATTTTATTTTACTTTAATTTATTTTAATCTTTTATTACTTCCCT
TAACATACCTCTTTATACCCCTATTTAACTTTTACCCCTAACACATTACC
CTGCTCTTTATTCCATCTTTCACTCCTCTAAATCATTTACCGCTTCTCAT
TATCTTATTAAACAATAATTTTACTTTCTCGTTTCTAT
CCCCCCCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACAGGGAAATCATCACTCAGG
GACTTCAGGCAGAAAACTAGCCAGTCAGCCTCTGGATAGACAAGGCTCAA
CAGTTCAGAGAACCAGGCCATCGCAAATAGTTCACAGACCTGCAAGGAAG
ACATGCAGATCCCTGCCCCCCACCCTACCCCTCCCCCAGCCCCACCCAAA
CATAGGGAGAAAAGGCAGTGTGGGGGAGGGGGAGGTGCTGTGAGAGAATT
TAGATAGCTCGAAGAAATAAATAGCTGGAGACTTCATTCATTTACTTATT
TTATTGAGTATATGGTGAAAGAGGGAAAATGGCTCGAAAAGGAGGGAGGG
CAGACTGTCTTCCCATGCTGGGATCATTCATGCCTTATAAAGGAATGCAG
GAGGCTGGAGAGATGGCTCAGCGGTTTATAGCCCTGACTGCTCTTCTGAA
TATCCTGAGTTCAAATCCCAGCAACCAAATGGAGGGTGATTCTCCTTCCT
ACTTTCTATCTTCCGTTGATCATTTTTCTTATTATTCAACATCTTATTTT
CACATTTTAATATCGATCCTCTCCTCTCTATACTTTTCTTCTCTCCTATT
TATTATATTAAATATTTCTATAATACTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no138_i10.b1 MSMg01no138_i10.b1 CHROMAT_FILE:
MSMg01no138_i10.b1 PHD_FILE: MSMg01no138_i10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:35 2005
         (387 letters)



>mm_chr18_40467469_40468255
          Length = 787

 Score =  369 bits (191), Expect = e-106
 Identities = 236/251 (94%), Gaps = 2/251 (0%)
 Strand = Plus / Minus

                                                                       
Query: 8   gaattctctgaactcactgtcctttcaggtccacatttgctctggctctggcaactgact 67
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 457 gaattctctgaactcactgtcctttcaggtccacctttgctctggctctggcaactgact 398

                                                                       
Query: 68  gaaccaaacaattaggctcatacctagaactttggaaatggtaatggagttgataacaca 127
           ||||||||||| |||||||||||||||| ||| | |||||||||||||||||| ||||||
Sbjct: 397 gaaccaaacaa-taggctcatacctagatcttcgaaaatggtaatggagttgaaaacaca 339

                                                                       
Query: 128 ccctaacagaaagaggaatgctccactcactagtacactttcactag-agcctcaccctg 186
           | |||||||||||||||| |||||||||||||| | ||||||||||| |||||| |||||
Sbjct: 338 ctctaacagaaagaggaaggctccactcactagaagactttcactagaagcctcgccctg 279

                                                                       
Query: 187 tcagcagtttaggaatttgtaaagccaatctggacaatatttaaatggtttggaatttct 246
            |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 278 ccagcagtttaggaatttgtaaagccaatctggacaatatttacatgatttggaatttct 219

                      
Query: 247 acttcatgttt 257
           |||||||||||
Sbjct: 218 acttcatgttt 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 787
Length adjustment: 9
Effective length of query: 378
Effective length of database: 778
Effective search space:   294084
Effective search space used:   294084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)