Query= MSMg01no139_n17.b1 MSMg01no139_n17.b1 CHROMAT_FILE:
MSMg01no139_n17.b1 PHD_FILE: MSMg01no139_n17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:23 2005
(682 letters)
>mm_chr18_22291427_22292508
Length = 1082
Score = 971 bits (502), Expect = 0.0
Identities = 508/510 (99%)
Strand = Plus / Minus
Query: 6 gaattcatggcaaattgcagacaaaaaattcctggataattttccataaaaatctaaaat 65
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gaattcatggcaaattgtagacaaaaaattcctggataattttccataaaaatctaaaat 451
Query: 66 tcttttttccttctacatttctgtcctggcatgcctaagttacagtattacttaatttag 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tcttttttccttctacatttctgtcctggcatgcctaagttacagtattacttaatttag 391
Query: 126 aatgaactctactgagtctaaatttttctctttgtttaatataaatctttaagctgttac 185
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 390 aatgaactctactgagtctaaatttttctctttgtttaatataaatctttaagctgctac 331
Query: 186 aatgattaaaatgttacaaaatatacaggaaacatctgaaaatattacgataatgctgtc 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 aatgattaaaatgttacaaaatatacaggaaacatctgaaaatattacgataatgctgtc 271
Query: 246 caatgagaatattaatattcttaccaataagctgataatagagtgatataaaactgtcca 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 caatgagaatattaatattcttaccaataagctgataatagagtgatataaaactgtcca 211
Query: 306 tattttgtattaatcactttctgtgatctcatcaatccttatcttaaccttctaagacag 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 tattttgtattaatcactttctgtgatctcatcaatccttatcttaaccttctaagacag 151
Query: 366 aaactcaagtacaggtgaggaaaatgacctcagaggcctatgttccttaagatcacatag 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 aaactcaagtacaggtgaggaaaatgacctcagaggcctatgttccttaagatcacatag 91
Query: 426 tcggtgcagagtcagcctgaggccaagtgtgtctgggggctacaaacatccctccatgct 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90 tcggtgcagagtcagcctgaggccaagtgtgtctgggggctacaaacatccctccatgct 31
Query: 486 gggcagtgacatctgtccctggcaagtggc 515
||||||||||||||||||||||||||||||
Sbjct: 30 gggcagtgacatctgtccctggcaagtggc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space: 720384
Effective search space used: 720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no139_n17.g1 MSMg01no139_n17.g1 CHROMAT_FILE:
MSMg01no139_n17.g1 PHD_FILE: MSMg01no139_n17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:23 2005
(612 letters)
>mm_chr18_22145505_22146518
Length = 1014
Score = 1160 bits (600), Expect = 0.0
Identities = 610/614 (99%), Gaps = 2/614 (0%)
Strand = Plus / Plus
Query: 1 ttctgcttctataaccaggaggcaaaagccctggtctcatgtcactaacttcaggtgtca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctgcttctataaccaggaggcaaaagccctggtctcatgtcactaacttcaggtgtca 260
Query: 61 ctatctaacatcctcttcttggtctgttattcaaaaacaagaattagaaagtcgacagga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctatctaacatcctcttcttggtctgttattcaaaaacaagaattagaaagtcgacagga 320
Query: 121 ataataaatccagtgtcacaccaaaccatgatgcagacagtttgctgaataaataaataa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataataaatccagtgtcacaccaaaccatgatgcagacagtttgctgaataaataaataa 380
Query: 181 aaattccttctgtcagattccagccattagttaaaaactttagaaaaacattgttattta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaattccttctgtcagattccagccattagttaaaaactttagaaaaacattgttattta 440
Query: 241 tttcagaggctggttaggggtgtggtctttcctggttgtacaggtcagattttaagcttc 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttcagaggctgggtaggggtgtggtctttcctggttgtacaggtcagattttaagcttc 500
Query: 301 agaacagcttaattat--ttcttctgtgtagtatagggatgcatagtgatgtaaggttta 358
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaacagcttaattatatttcttctgtgtagtatagggatgcatagtgatgtaaggttta 560
Query: 359 gagagggtaacatcattagtcttgattcagctgctaactgtgattttgatcctctgggta 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagagggtaacatcattagtcttgattcagctgctaactgtgattttgatcctctgggta 620
Query: 419 gatagcttagaggctatcagcccctgttgatcactgtgtaaagatattcatcattgggaa 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gatagcttagaggctatcagcccctgttgatcactgtgtaaagatattcatcattgggaa 680
Query: 479 ggtataggggactcttgggatagcatttgaaatgtaaatgaagaaaatatctaatacaaa 538
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggtataggggactctcgggatagcatttgaaatgtaaatgaagaaaatatctaatacaaa 740
Query: 539 agatattcatgatcaaatacaaataataagtaagacttctgtctctgtagccacttatac 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agatattcatgatcaaatacaaataataagtaagacttctgtctctgtagccacttatac 800
Query: 599 caggtgcctcttcc 612
||||||||||||||
Sbjct: 801 caggtgcctcttcc 814
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1014
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1004
Effective search space: 604408
Effective search space used: 604408
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
