BAC Information

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BAC

Clone NameMSMg01-139P17
Chromosome18 (Build37)
Map Location 58,711,431 - 58,711,751
singlet/doubletsinglet
Overlap genenone
Upstream gene1700011I03Rik, 4930511M06Rik, 2210409D07Rik, Slc12a2, 9330166H04Rik, Fbn2
Downstream geneSlc27a6, Isoc1, Adamts19, A730017C20Rik, 4833446K15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-139P17.T7 (MSMg01no139_p17.b1)MSMg01-139P17.TJ (MSMg01no139_p17.g1)
ACCAG345246AG345247
length723752
length of high quality
(start - end)
326 (43 - 368)331 (70 - 400)
definitionCHROMAT_FILE: MSMg01no139_p17.b1 PHD_FILE: MSMg01no139_p17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:33 2005CHROMAT_FILE: MSMg01no139_p17.g1 PHD_FILE: MSMg01no139_p17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCAGAGAATCCGCGGAAT
TCTCTGTCAGTAACAAAACTTTCCATAAATATCTTTCCCAGAAAGTCAAT
TTTACCAATGTCAAGGAAGGGAATATTTTTTTTTTTTTTTTACAACCAGC
AGTGTCTGGATCTAAAAAATACCATGCATAAAGCCCATGTGTCAAAGTAT
CTCTTTAGGACTTGTATTCACATAAACTTCTAGTTACATTTTCAGTTAGT
GGTAAAGTAATAGTTAAATATTTAATTTGTTTGAGAGTTGCTGCCAGAAC
TATTATTATGGGGTGGTTTAGTTGGCACTATAAAACTTTTTTATATTTGA
AGATGCGTTTGATGTGTCCAACATATGAATCAGCGTTAACAGCCCCTAAC
TCCTATAGTACTTCCCCGCCCCAATATTGTCTGCTTCATAAGGTCCTGAG
GTTGAAACTGTTTCACACATATTTATTCCTTACCCCATATTTTTTTTGAT
TTACCGTACACTTATATCTTCTACCAAACCCCATTTTGCCCATACTCCCT
ACCGTCACTCATTACCACGTGTAAAAGGCTGCCCCTTCCGCTTGTACCTC
CTAATCCCCCTATTTCCCCCCTCTTCCCCTTCCTCTCCACCTTTCCCTTC
CTTGAACCTTCTTTTGTTTTTTGCGCCTCCCTGTCCCCCCCCCTCCCCTA
CCCTTTTTTCATCATATCTCATT
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGGCACAAAATCTAGGAAACCTGAGACCATA
TAAAAAAAAATCTAAGAATAATAGAATGAAAAGAAGGAGAGGAAACCCAG
GTCAAAGACAAAGAAGATATTTTTAACAAAACCATAGAAGAAAATATTCC
CAGTCTTAAAAGGGGGGATGCCTTATCAGGGTTACTTTTTAAGCTTTTGG
TATACCCATATCAGTATCCATATAACTGCAGAGATTATATATCTAGTAAG
GGACTAGGAGGGAGGGGACTATTTAGCCAGAAAGGAGAAATAGAATATAT
AATTATGGGGAGACAAGGGGAGAAGGGAGTTAAGAGGGAAGAGGGTTAAN
NATGTTTTTTCCCCCCCCTCCNNNCCCCCTTTTTTTTTTTTTTCATTTTT
TCCCCTCCCTAATTTCTAACCCATAAACCTCCTTCCCCAAACTTTAAAAT
TCTAATTACCTCTTTTTTTCCCCCCTCATCTCCTTTCACCAATATTTATC
TTCAATTTACCCCTTTTTACCTTTCAACCCATTTCACATTCCCCTTTTTC
ATTTATTAATACCCTTAAATCCATTTTCCCCCACCCCCCCTTTTTACTCC
CTTCCCCTTTATCTCCTTTCCTTCTCTTTCCCCGCCTTTCACTCCTCCTC
ACTTTTTTTTTCCCCTTATTTCCCCCCACTTATTTTTCCCCTTTTTTTCC
TN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no139_p17.b1 MSMg01no139_p17.b1 CHROMAT_FILE:
MSMg01no139_p17.b1 PHD_FILE: MSMg01no139_p17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:33 2005
         (326 letters)



>mm_chr18_58711226_58711951
          Length = 726

 Score =  584 bits (302), Expect = e-171
 Identities = 317/322 (98%), Gaps = 1/322 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctgtcagtaacaaaactttccataaatatctttcccagaaagtcaattttacc 64
           |||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctctgtcagaaataaaacttttcataaatatctttcccagaaagtcaattttacc 265

                                                                       
Query: 65  aatgtcaaggaagggaatattttttttttttttttacaaccagcagtgtctggatctaaa 124
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aatgtcaaggaagggaat-ttttttttttttttttacaaccagcagtgtctggatctaaa 324

                                                                       
Query: 125 aaataccatgcataaagcccatgtgtcaaagtatctctttaggacttgtattcacataaa 184
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 325 aaataccatgcataaagcccatgtgtcaaagtatctctttaggacttggattcacataaa 384

                                                                       
Query: 185 cttctagttacattttcagttagtggtaaagtaatagttaaatatttaatttgtttgaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cttctagttacattttcagttagtggtaaagtaatagttaaatatttaatttgtttgaga 444

                                                                       
Query: 245 gttgctgccagaactattattatggggtggtttagttggcactataaaacttttttatat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gttgctgccagaactattattatggggtggtttagttggcactataaaacttttttatat 504

                                 
Query: 305 ttgaagatgcgtttgatgtgtc 326
           ||||||||||||||||||||||
Sbjct: 505 ttgaagatgcgtttgatgtgtc 526


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space:   227289
Effective search space used:   227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)