BAC Information

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BAC

Clone NameMSMg01-140L16
Chromosome18 (Build37)
Map Location 52,689,621 - 52,689,992
singlet/doubletsinglet
Overlap genenone
Upstream geneEG240289, Ftmt, Srfbp1, Lox
Downstream geneZfp474, 1700034E13Rik, Gykl1, Sncaip, A730036E13Rik, LOC667317, LOC100042430, Snx2, Gm1859, Snx24, Ppic, Prdm6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-140L16.T7 (MSMg01no140_l16.b1)MSMg01-140L16.TJ (MSMg01no140_l16.g1)
ACCAG345789AG345790
length704708
length of high quality
(start - end)
231 (44 - 274)372 (73 - 444)
definitionCHROMAT_FILE: MSMg01no140_l16.b1 PHD_FILE: MSMg01no140_l16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:33 2005CHROMAT_FILE: MSMg01no140_l16.g1 PHD_FILE: MSMg01no140_l16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCGGAAT
TCATCCCATCTCAGACACCAAATGCCCACACTATTGCTGATACCTAGAAG
TACTGAGAGGAGCCTGAAATGGCTGTTCCCTGAGAGGCTTTGACAGTACC
TAACTAATACAGATGCAGATACAGCCAATAATTGGACTGGACCTGGGGAC
CCCAATGGAAGAGCTACGGGAAGGACTGAAGGGAGTGCAACGCCATTGGA
AAAAACCATATCAACTAACCAGACCACCCAGAGTTCCCAGGGACTTAACC
ACCAACCTAACAGTATTTATGGAGGGACCCATGGCTCCAGCTGCATATGT
AAAAGAGGATGACTTTATCTGATATCAATCGGGAGGAGAAGCTTTTGGTC
CTGTGGAGGCTTGATGCCCCAGCATACACGGCTGCTTGAGCCGCGCCGCT
TCTCTACCTGATTGTTTTCTGCATCTTCTTCTTAGATTCGCATACTACCC
CCCCATTTCCTTTACGCTTCTCTTTCTTTTCCTATCTTTCTATCTCTCTT
CTTTCCCTTTTTTTCTCCCCCCTTTCCCTTTCCTTCTCCCTTTATCCCAT
CCTCTTCTCTCTCCTCTTATTTCTTTCTCACAACTCTCCCCTTCTCTTTT
CTCCCCCTCTTTTTCCTCTCCCTCCTTCTTTTTTTTTTCCTCCCCTCCTC
CCCT
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTGTCACTTAAAGTGCAAATTGGGCTGG
TTCTTTTAAGAACAACAACAACAAAAAGAAAAAAGAGTCGGATTTATTCA
CTTTTTCAACGTAGCAAGCTTTGTTCCCTATAAATTTTCACTTTGGTTAT
TAAAATATTCACTGTAGGAAACAGATTTGTAACCCATTTCTCATATTACC
TACAGCCAGAAAAACAAAATTTGATATCCTGGGGTTTATTCGCTGAGGGC
GCTTCCCATAAAAGTGGTGTGAGTGTGTATTGGGAAATTTGTCTGCTTAA
CTCCTTTATGCATAAGCCTTATTCACAACCTCCCCCATCCTAGAGCACAC
AGTTTGGCCCCCACCACTCTCCCCACCTCCTGCTTCCCGCCTCTCCAGGG
TTGGTGACCTAATAGCATTTTTCTTCATGCATATTTTGACTTGCGCCCAT
GTTCTTGTCTGTCTTCGTCTGTCTGAGCCTCTTGAAATTCCTGCATGTTC
GGCCCATATTAAGATGAGCGCGCCTTCACATGTGTGTTCCGTTTTGTTCC
CTACCCTTTATTTCCCCTTGTCAAACCTGTCTGTTTCACCAGTATAAACT
CTAAATTACTCCTTTTAACATCCCTATTCCTCTTATTTTCTCATTTTCTC
TTTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no140_l16.g1 MSMg01no140_l16.g1 CHROMAT_FILE:
MSMg01no140_l16.g1 PHD_FILE: MSMg01no140_l16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:33 2005
         (372 letters)



>mm_chr18_52689421_52690192
          Length = 772

 Score =  688 bits (356), Expect = 0.0
 Identities = 368/372 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgtcacttaaagtgcaaattgggctggttcttttaagaacaacaacaacaaaaagaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 ttgtcacttaaagtgcaaattgggctggttcttttaagaacaacaacaacaaaaagaaaa 513

                                                                       
Query: 61  aagagtcggatttattcactttttcaacgtagcaagctttgttccctataaattttcact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 aagagtcggatttattcactttttcaacgtagcaagctttgttccctataaattttcact 453

                                                                       
Query: 121 ttggttattaaaatattcactgtaggaaacagatttgtaacccatttctcatattaccta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ttggttattaaaatattcactgtaggaaacagatttgtaacccatttctcatattaccta 393

                                                                       
Query: 181 cagccagaaaaacaaaatttgatatcctggggtttattcgctgagggcgcttcccataaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 cagccagaaaaacaaaatttgatatcctggggtttattcgctgagggcgcttcccataaa 333

                                                                       
Query: 241 agtggtgtgagtgtgtattgggaaatttgtctgcttaactcctttatgcataagccttat 300
           ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| 
Sbjct: 332 agtggggtgagtgtgtattgggaaatttgtctgcttaactcctttaagcataagccttag 273

                                                                       
Query: 301 tcacaacctcccccatcctagagcacacagtttggcccccaccactctccccacctcctg 360
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tcacaacctcccccatcccagagcacacagtttggcccccaccactctccccacctcctg 213

                       
Query: 361 cttcccgcctct 372
           ||||||||||||
Sbjct: 212 cttcccgcctct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space:   276969
Effective search space used:   276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)