Query= MSMg01no141_a17.b1 MSMg01no141_a17.b1 CHROMAT_FILE:
MSMg01no141_a17.b1 PHD_FILE: MSMg01no141_a17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:00 2005
(726 letters)
>mm_chr18_44484527_44485651
Length = 1125
Score = 1336 bits (691), Expect = 0.0
Identities = 717/726 (98%), Gaps = 1/726 (0%)
Strand = Plus / Minus
Query: 1 cttttgtggntgccagagcgtctggcctctgcttgctgaactctagagaccaaccctata 60
||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct: 839 cttttgtggctgccagagcgtctggcctctgagtgctgaactctagagagaaaccctata 780
Query: 61 aagagcagagaaactggccgtggcaggaagacacaaatgtaatgcttccccccatgggaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 aagagcagagaaactggccgtggcaggaagacacaaatgtaatgcttccccccatgggaa 720
Query: 121 gaggaggattaagggagagagtgtgtgggaaacttctggaacttcttgtaagaaacacac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 gaggaggattaagggagagagtgtgtgggaaacttctggaacttcttgtaagaaacacac 660
Query: 181 cttataaataaatagaaggtcagccagtacaagaggctaaaatttcctctaacctccctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 cttataaataaatagaaggtcagccagtacaagaggctaaaatttcctctaacctccctg 600
Query: 241 acatgcctcaaaggagaagttggaaaacatcagccaaaaaagtgttagtcccaagtgaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 acatgcctcaaaggagaagttggaaaacatcagccaaaaaagtgttagtcccaagtgaga 540
Query: 301 gttggggacttagattttgtatctgcttcttttccatgaggaaaaaaaaatccaactttt 360
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 539 gttggggacttaggttttgtatctgcttcttttccatga-gaaaaaaaaatccaactttt 481
Query: 361 agataacggggatgttaaattgtggtcccttaatattttagatgtttcctgttctagcgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 agataacggggatgttaaattgtggtcccttaatattttagatgtttcctgttctagcgt 421
Query: 421 gaacaatcagaattagaacggaagacaccaaataccagatgctatcatctaatccatggt 480
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 420 gaacaatcagaattagaacggaaggcaccaaataccagatgctatcatctaatccatggt 361
Query: 481 gtggagaccatgtaggagtaggagttcttaattcctttgcctggttcccaaatcagtgaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 gtggagaccatgtaggagtaggagttcttaattcctttgcctggttcccaaatcagtgaa 301
Query: 541 aagagacagtggtagctaatacaatcaatatctgagacttacttttgtctactgctaaat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 aagagacagtggtagctaatacaatcaatatctgagacttacttttgtctactgctaaat 241
Query: 601 gaaattatgtctgaagaacttgtagaaatggataagatactatcttaattaggatttccg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gaaattatgtctgaagaacttgtagaaatggataagatactatcttaattaggatttccg 181
Query: 661 ttgctgtaataaaacaccgtgaccaaaagcaacttggcgtacaaagggtttatattagct 720
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 180 ttgctgtaataaaacaccgtgaccaaaagcaacttggggtacaaagggtttatattagct 121
Query: 721 tacaac 726
||||||
Sbjct: 120 tacaac 115
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 726
Length of database: 1125
Length adjustment: 10
Effective length of query: 716
Effective length of database: 1115
Effective search space: 798340
Effective search space used: 798340
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no141_a17.g1 MSMg01no141_a17.g1 CHROMAT_FILE:
MSMg01no141_a17.g1 PHD_FILE: MSMg01no141_a17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:00 2005
(649 letters)
>mm_chr18_44302042_44303090
Length = 1049
Score = 1185 bits (613), Expect = 0.0
Identities = 643/659 (97%), Gaps = 10/659 (1%)
Strand = Plus / Plus
Query: 1 agttcaaagaaaatgtgtgcttactgtttccccataatcaaagagctggcccacagactg 60
||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||
Sbjct: 191 agttcaaagaaaatgtgtgcttactgtttcctaagaatcaaagagctggttaacagactg 250
Query: 61 ctgattcataggataattaaaagggaacctggaataaatgactgaattcatatgtaaatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ctgattcataggataattaaaagggaacctggaataaatgactgaattcatatgtaaatt 310
Query: 121 aaagactgggcttttgctatgcatgagatgagctaagcagaaagtgatagcaattttcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 aaagactgggcttttgctatgcatgagatgagctaagcagaaagtgatagcaattttcca 370
Query: 181 attttctctagcaagagctgagctgtctagagatctctggagagtgaaaacagctcttca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 attttctctagcaagagctgagctgtctagagatctctggagagtgaaaacagctcttca 430
Query: 241 agagttttttttttttt----------cttaaaaggatttctacttggtggaagatctaa 290
||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 431 agagtttttttttttttttttttttttcttaaaaggatttctacttggtggaagatctaa 490
Query: 291 taatttttttatagcagcttttctgttggttagacaaaccatgagctatccagatagctt 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 taatttttttatagcagcttttctgttggttagacaaaccatgagctatccagatagctt 550
Query: 351 ttacaatttttactagccgagagagctgtttcaagcagagagtttttttttaaattaggt 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ttacaatttttactagccgagagagctgtttcaagcagagagtttttttttaaattaggt 610
Query: 411 attttcctcatttacattttcaatgctatcccaaaggtcccccatacccacccccccatc 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 attttcctcatttacattttcaatgctatcccaaaggtcccccatacccacccccccatc 670
Query: 471 ccctacccacccactccccctttttggccctggcgttcccctgtactggggcatataaag 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 ccctacccacccactccccctttttggccctggcgttcccctgtactggggcatataaag 730
Query: 531 tttacaagtccaatgcgcctctctttgcagtgatggccgactaggccatcttttgataca 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 tttacaagtccaatgcgcctctctttgcagtgatggccgactaggccatcttttgataca 790
Query: 591 tatgcagctagagacaagactccggggtactggttagttcatattgttgttccagtttt 649
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 tatgcagctagagacaagactccggggtactggttagttcatattgttgttccagtttt 849
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space: 663921
Effective search space used: 663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
