Query= MSMg01no142_a24.b1 MSMg01no142_a24.b1 CHROMAT_FILE:
MSMg01no142_a24.b1 PHD_FILE: MSMg01no142_a24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:01:13 2005
(759 letters)
>mm_chr18_22935178_22936336
Length = 1159
Score = 1340 bits (693), Expect = 0.0
Identities = 738/759 (97%), Gaps = 11/759 (1%)
Strand = Plus / Minus
Query: 1 agtcatctatttttctatatagcatcactacaagacagtacatcttcattgttctgcaga 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 876 agtcatctatttttctatata-----actacaagacagtacatcttcattgttctgcaga 822
Query: 61 aatctgctcaaaagtatgggctaatacatagtgattgttatatatatttaataataacag 120
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 821 aatctgctcaaaagtatgggctaatacctagtgattattatatatatttaataataacag 762
Query: 121 gaaaagcatatcaatagtaggaacctttcctaaatgaaattctccttagccttgcctaaa 180
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 gaaaagcatatcaataataggaacctttcctaaatgaaattctccttagccttgcctaaa 702
Query: 181 ggaacaaatccatcatagatgtttaattcatgacagagcaatctcaggaagatcacctgc 240
|||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 701 ggaacaaatccatcatagatttttaattcatgac------atctcaggaagatcacctgc 648
Query: 241 taggttttagcttctccttcatgactcctggcactattgtcatagctagattttattgtc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 taggttttagcttctccttcatgactcctggcactattgtcatagctagattttattgtc 588
Query: 301 acttgacacacctggaagacagaagcttaactaaagattattgttgttgttgtttcatca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 acttgacacacctggaagacagaagcttaactaaagattattgttgttgttgtttcatca 528
Query: 361 ttgatgtagcagtacccactgaggactataatattccaagacagggggctctgtgctgtg 420
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 527 ttgatgtagcagtacccactgagggctataatattccaagacagggggctctgtgctgtg 468
Query: 421 taagaccatagactaagcaagccagtaagtggtatactccatagtctgaattttatttct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 taagaccatagactaagcaagccagtaagtggtatactccatagtctgaattttatttct 408
Query: 481 gtctccagattgttaccttaagcctcctgtcctggtttccctggatatagactttaacct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 gtctccagattgttaccttaagcctcctgtcctggtttccctggatatagactttaacct 348
Query: 541 gaaggccacacagcaacatagagcacactacaacaatcatattatagatttgcataatga 600
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 347 gaaggccacacagcaacatagagcacactacaacaatcatattattgatttgcataatga 288
Query: 601 tcaatgctctatcagagttatatagggcacatcatcgaactgttggcatctgacacttaa 660
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 287 tcaatgctctatcagagttatatagggcacatcatcgaactgttggcatctggcacttaa 228
Query: 661 tttcaatattcttccgtatgtagacatttctcaacgcttagttttccattgtttgtgtac 720
|| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 227 ttccaatattcttccttatgttgacatttctcaacgcttagttttccattgtttgtgtac 168
Query: 721 ctcataaaatacatatctagtcatgtctcatcccaagca 759
|||||||||||||||||||||||||||||||||||||||
Sbjct: 167 ctcataaaatacatatctagtcatgtctcatcccaagca 129
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 759
Length of database: 1159
Length adjustment: 10
Effective length of query: 749
Effective length of database: 1149
Effective search space: 860601
Effective search space used: 860601
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no142_a24.g1 MSMg01no142_a24.g1 CHROMAT_FILE:
MSMg01no142_a24.g1 PHD_FILE: MSMg01no142_a24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:01:14 2005
(644 letters)
>mm_chr18_22885668_22886711
Length = 1044
Score = 1176 bits (608), Expect = 0.0
Identities = 632/640 (98%)
Strand = Plus / Plus
Query: 5 ttactattgacaagaaaattaaagtcattcagcgaacagaaattttaaaaataaacaccc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 205 ttactattgacaagaaaattaaagtcattcagcgaacagaaattttaaaaataaaaaccc 264
Query: 65 cagagatggtagaaaatgttcattttcttatgttttgttttgttttctcccgaaaaggtg 124
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 265 cagagatggtagaaaatgttcatttttttatgttttgttttgttttctcccgaaaaggtg 324
Query: 125 agaaatcccgactaatgattttatttgagcactggtgctgtaaagcaatcattgatagtt 184
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agaaatcctgactaatgattttatttgagcactggtgctgtaaagcaatcattgatagtt 384
Query: 185 tcaaaattagagacaggtgcgccagcatggttgagtaagcagaatgaaaacaatcccctc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcaaaattagagacaggtgcgccagcatggttgagtaagcagaatgaaaacaatcccctc 444
Query: 245 gtaatgttgctctacataattgattcccagctacctttgatgaatactctgttcaatcat 304
|||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 445 gtaatgttgctcaaaataattgattgccagctacctttgatgaatactctgttcaatcat 504
Query: 305 acagtaaacatacttccacggggactgtgcattttgaaagagccgtggaactgagatctt 364
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 505 acagtaaacatacttccacggggactgtgcattttgaaagagccatggaactgagatctt 564
Query: 365 aatttctacacacttggaaaaaaggagcttatagattattatagtttaaactgggtgtaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aatttctacacacttggaaaaaaggagcttatagattattatagtttaaactgggtgtaa 624
Query: 425 aaaccacccatccattttttttggtacttgaagtatattaattatgaagcagtcaaacta 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaaccacccatccattttttttggtacttgaagtatattaattatgaagcagtcaaacta 684
Query: 485 aggtaattagaaagccatcaatatggcagagcctggatcactgagggataatgattttta 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aggtaattagaaagccatcaatatggcagagcctggatcactgagggataatgattttta 744
Query: 545 tagtaatgtggaattaaaatttaaaaggatcgtggcatgagaagctgcttacaaaatgat 604
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 745 tagtaatgtggaattaaaatttaaaaggatcatggcatgagaagctgcttacaaaatgat 804
Query: 605 ctaaaaataacttatctgatgatggatttaatacacaccc 644
||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ctaaaaataacttatctgatgatggatttaatacacaccc 844
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space: 655556
Effective search space used: 655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
