BAC Information

Click to search

BAC

Clone NameMSMg01-142D17
Chromosome18 (Build37)
Map Location 39,175,494 - 39,176,212
singlet/doubletsinglet
Overlap geneArhgap26
Upstream genePcdh1, LOC100042583, 1700086O06Rik, 0610009O20Rik, Pcdh12, Rnf14, Gnpda1, LOC240219, LOC100041839, Ndfip1, Spry4, 9630014M24Rik, LOC100041865, LOC100041875, LOC100042671, LOC666809, LOC100041894, Fgf1, EG545253
Downstream geneNr3c1, Pabpc2, LOC100041939
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-142D17.T7 (MSMg01no142_d17.b1)MSMg01-142D17.TJ (MSMg01no142_d17.g1)
ACCAG346896AG346897
length1,2231,358
length of high quality
(start - end)		719 (90 - 808)123 (80 - 202)
definitionCHROMAT_FILE: MSMg01no142_d17.b1 PHD_FILE: MSMg01no142_d17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:01:38 2005CHROMAT_FILE: MSMg01no142_d17.g1 PHD_FILE: MSMg01no142_d17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:01:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCAATTTNNNNNNGACATTGGGCGCTATAGACTCCTATAGGGAGAGGA
TCCGCGGAATTCCTTTTTGGTCTCAGTGCGTTGAGTAGCATTAATGACCT
ACAATAAAGTAGCCGCTGTCGTCACCATCATCTTGTCAGTGCCAGTAAGG
CAGGTTTGTAGACGTGATGCTTCCGTTCTGGCTGCAATAGCCAGATTACT
TAAACAACCTGAAGGAGTGAAAACCGAGCAAGACGCTTAAACAAAACGCA
TTTGCTATGGTGTGTAGCTAGAAAGCCCAGGGCTATTCCAATTTTGCATT
TCACAGGATCCCTTAGCCCCAAAGGGTACCTTCAGCTCTGGTTTCTCTCT
GCCATTGAACTCCTTATTCTTCTTGGGTCGTTCCATTCTCAGGTGCCTCT
TCCCTCATCTTTGCAAGATGACTTATGGCCCGTGTAAGTTCAGAACTTAC
GGATAAGTTCATAAGTCTAAGCTTGGGTTTTGTTGGCTTGTTCTTGAATT
ATGTGTTCATCCTTGAGATAACCTTTGAAGCTGGCCTGAACCCAGAGTAG
AGTAACTGCATGTGAAATAAATGTTCTGGAAGCCAGCGATGGATGGTGTC
CCCAGAGGAATATTAGGGTGCTATAAATACAGGGGAAGTGGGGATAGTAG
CCAAGGCAACCACAATTCTCCACACTGGGCCCAAGTAAGTGAGCAAGGTC
ATCCAGGGAAGGGAAAGAGCTTTCCCTCCCAGACAGATCACGGCTCTTAT
CCACTTTTGGAGAAAATAATTTGGGCTGTCAACTTTGTGGTTTTAAAAGT
AATCTTGGACACTTAGATTTTGAGGAGGAGCAATGAGATAGTTTTGAAAT
ATTGGACACCATTACATCTGGATAGACCAGGTAGTCTAAAAGATGTCTAA
AAGCCTTGTGCCTAAAGAATAGGGTAGGGATCTGTCCAGAAGATTGTAGT
GTATGTGTGTATGTGTGTGTGCCTCCTTCTTTCCTTTCTTTCCTTTCCTT
TCCTTCTTCTTCTTCTCTCTCCTTTTTCTTTTTTATTCTTCTTTCTTATC
TTCTTTTTTTTTTTCTTTTTTACTCTCTTTTTTCTTTNTTCTTTNTTATT
CTTTCTCTCTCTCTTTTTCTTTCTTTTTTTTTTATTTTCCTTTCTTTATT
TCTCTCTTTCTTTTTCCTTTTTTTTATTTTTTATTTTCTTTNTCTTTCTC
CTCTTTTCTCTTTCTTTTTTTTC

TTTTTGAACTGTGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTTTTAAAGTCCAGCAGAGACACTGGATTCGTGG
AAAGATACCGTAGAGAGGCCCCTTGGTCTTGCAAACTTTATATGCCTCAG
TATAAGGGAACGCCAGAGCCAAGAAGTGGGAGTGGGTGGGTAGGGGAGTG
GTAGTTTTTTTTTTTTTTTTTTGTTTCTTTTTTTCTTTTTGCTTTGTTTT
CTCCCTTCCTGTNTTTTTTTTCTTTCCCTCGTTTTTTTTTTGATTTCTTC
TTTTTTTGTTTGTCTGTCTTTTTTTGTTTCTCTTGTTTTTTTTTCTTTTT
CTCTTTTTGTTTCTTTTTTTTTTCTTCTTTTCTTTCTCTTTTTTTTTTTT
TTTTGCCTGGCTCGCTCCCTCTCTCTTTTTCTGTGTCTTTTTCCTCCTCT
CTTTTTTCTCCTCCCCCTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTT
TTTGTTTTTTTTTTTTTTCTTTTCCTTCTCTCTCTTTTCTTGTTTTTTTT
TTCTTTTTTTTTTTTTTTTCTTCCTTTTTCATTTTTTTTTTCTTTCCTCC
TTTTTTTGTCTTTTGTTTTCTTCTTTTTTCTTTTCCTTCTTTCTTTCTTT
TCTTTTTCTTTCTCTATCTCTTTTTTTCTTCTCTTTTCTTTTTTTTTTTT
TTTCTGTTTTTCTTCTTCTTCTTTTTCCTTCTTTCTTTTCTTTTCTTCTT
TTTCTCTCTCTTTCTCTTTTTTCTTCTTTTTTTTTTTTTCTTTTTGTTTT
TNTTTTTTTATTTTGTTTCTTTTTTTTCTTTTCTTTTCTTTGTCTTTTTT
TTTTATCTCTTTTCCTTTTTTTTTTTTTTTTCTTTTTTTTTCTTTCTTGT
CCTTCCTTTTTCCTTCTTTTCTCTTTTTTCTCTTTTTTTCTCCTTTTTTT
TCTTTTCTTGTTATTCTTTTTTTCCTTTCTTCTTTCTATCTTTTTTTTTC
TTTATCCTTTTCTTCTTCATTTTTTCTTATTTTCCTTTTTTCCTTCCTTT
TTTTTTTTATCTTTCTCTATTTCTTTTTCTTTTATTCCTTTTTTACTCCT
TTTCTTTCTTATTTTTTTTTTCCTTTCTACCTTTCTTTATCTGTTTTTTT
ATATTATTTCTTTTCTCCCCCTCTTTTCTTTTTTTTTTTTTCTCTCTCTT
TTTCTCTTTTATCTTTCTTTTCTTATTTCCTCTCTATCCTTTTCTTTTTT
GTCCTTTATCTTTTATCCCTTCTCTTCTTTTACTCTTCTTTTCTCTCTAT
TTTTTTTCTTGACTTTTTTTTCCTCATTCTCTTTTCTCTTTTCACTATTC
TTTTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no142_d17.b1 MSMg01no142_d17.b1 CHROMAT_FILE:
MSMg01no142_d17.b1 PHD_FILE: MSMg01no142_d17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:01:38 2005
         (719 letters)



>mm_chr18_39175294_39176412
          Length = 1119

 Score = 1367 bits (707), Expect = 0.0
 Identities = 716/719 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attaatgacctacaataaagtagccgctgtcgtcaccatcatcttgtcagtgccagtaag 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 attaatgacctacaataaagtagccgctgttgtcaccatcatcttgtcagtgccagtaag 260

                                                                       
Query: 61  gcaggtttgtagacgtgatgcttccgttctggctgcaatagccagattacttaaacaacc 120
           ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcacgtttgtagaagtgatgcttccgttctggctgcaatagccagattacttaaacaacc 320

                                                                       
Query: 121 tgaaggagtgaaaaccgagcaagacgcttaaacaaaacgcatttgctatggtgtgtagct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaaggagtgaaaaccgagcaagacgcttaaacaaaacgcatttgctatggtgtgtagct 380

                                                                       
Query: 181 agaaagcccagggctattccaattttgcatttcacaggatcccttagccccaaagggtac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaaagcccagggctattccaattttgcatttcacaggatcccttagccccaaagggtac 440

                                                                       
Query: 241 cttcagctctggtttctctctgccattgaactccttattcttcttgggtcgttccattct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttcagctctggtttctctctgccattgaactccttattcttcttgggtcgttccattct 500

                                                                       
Query: 301 caggtgcctcttccctcatctttgcaagatgacttatggcccgtgtaagttcagaactta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caggtgcctcttccctcatctttgcaagatgacttatggcccgtgtaagttcagaactta 560

                                                                       
Query: 361 cggataagttcataagtctaagcttgggttttgttggcttgttcttgaattatgtgttca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cggataagttcataagtctaagcttgggttttgttggcttgttcttgaattatgtgttca 620

                                                                       
Query: 421 tccttgagataacctttgaagctggcctgaacccagagtagagtaactgcatgtgaaata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tccttgagataacctttgaagctggcctgaacccagagtagagtaactgcatgtgaaata 680

                                                                       
Query: 481 aatgttctggaagccagcgatggatggtgtccccagaggaatattagggtgctataaata 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aatgttctggaagccagcgatggatggtgtccccagaggaatattagggtgctataaata 740

                                                                       
Query: 541 caggggaagtggggatagtagccaaggcaaccacaattctccacactgggcccaagtaag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 caggggaagtggggatagtagccaaggcaaccacaattctccacactgggcccaagtaag 800

                                                                       
Query: 601 tgagcaaggtcatccagggaagggaaagagctttccctcccagacagatcacggctctta 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgagcaaggtcatccagggaagggaaagagctttccctcccagacagatcacggctctta 860

                                                                      
Query: 661 tccacttttggagaaaataatttgggctgtcaactttgtggttttaaaagtaatcttgg 719
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 tccacttttggagaaaataatttgggctgtcaactttgtggttttaaaagtaatcttgg 919


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 719
Length of database: 1119
Length adjustment: 10
Effective length of query: 709
Effective length of database: 1109
Effective search space:   786281
Effective search space used:   786281
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


| Home | SequenceCutter | Blast | Download |