Query= MSMg01no142_e03.b1 MSMg01no142_e03.b1 CHROMAT_FILE:
MSMg01no142_e03.b1 PHD_FILE: MSMg01no142_e03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:01:42 2005
(721 letters)
>mm_chr18_47662263_47663383
Length = 1121
Score = 1313 bits (679), Expect = 0.0
Identities = 711/727 (97%), Gaps = 12/727 (1%)
Strand = Plus / Minus
Query: 1 ttcaccaccgctgaattgctataaaaaggcgtccttttatcgggatttattagataatac 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 921 ttcaccagggctgaattgctataaaaaggcgtccttttatcgggatttattagataatgc 862
Query: 61 attactgaagaccaattagcccctgttccaaacacagtaaaggccaaaaacatgaatgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 attactgaagaccaattagcccctgttccaaacacagtaaaggccaaaaacatgaatgag 802
Query: 121 attatgtaaagtgcccagcacaaaccacaggaccccagtcttccctgctcaccaac--tc 178
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 801 attatgtaaagtgcccagcacaaaccacaggaccccagtcttccctgctcacc--cgttc 744
Query: 179 tgccacatgaggagcccaggctcctggtcttcctggatggtcacttaagcaccataaaag 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tgccacatgaggagcccaggctcctggtcttcctggatggtcacttaagcaccataaaag 684
Query: 239 cgcagagtgagtctggaggatatttgcttattttccagag----aattttaatccagaga 294
|||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 683 cgcagagtgagtctggaggatatttgcttattttccagagaagcaa----aatccagaga 628
Query: 295 tgttcattcttctaacatatcataggaaacaacccagaggaaggatctagccaatgagaa 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 tgttcattcttctaacatatcataggaaacaacccagaggaaggatctagccaatgagaa 568
Query: 355 ctggtcaatcccatgaacagaagagcagggcctgtgtcactcactgcagaacccaggaag 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ctggtcaatcccatgaacagaagagcagggcctgtgtcactcactgcagaacccaggaag 508
Query: 415 cttacaaagggaattgccttcagtcttcaggtctgtcacttattagtgtccctgccataa 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 cttacaaagggaattgccttcagtcttcaggtctgtcacttattagtgtccctgccataa 448
Query: 475 gcaggctgcagttctcgtctttccccctcatgcctttagtttattcacaagcataattag 534
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gcaggctgcagttctcgtctttccccctcatgcctttagtttattcacaagcataattac 388
Query: 535 cacatgtatgctccatcatatgcttacagatgcttttgatctcttcgtcagagagcacac 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 cacatgtatgctccatcatatgcttacagatgcttttgatctcttcgtcagagagcacac 328
Query: 595 atcttacaaaacattttcattctcggttggatgattaaattcaaacagccttatttttta 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 atcttacaaaacattttcattctcggttggatgattaaattcaaacagccttatttttta 268
Query: 655 agtagtttggtattcttttagaacaaaaaaaaaagagagagagagagatgtgtttattta 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 agtagtttggtattcttttagaacaaaaaaaaaagagagagagagagatgtgtttattta 208
Query: 715 ttgtgtg 721
|||||||
Sbjct: 207 ttgtgtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 721
Length of database: 1121
Length adjustment: 10
Effective length of query: 711
Effective length of database: 1111
Effective search space: 789921
Effective search space used: 789921
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no142_e03.g1 MSMg01no142_e03.g1 CHROMAT_FILE:
MSMg01no142_e03.g1 PHD_FILE: MSMg01no142_e03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:01:42 2005
(683 letters)
>mm_chr18_47514344_47515425
Length = 1082
Score = 1212 bits (627), Expect = 0.0
Identities = 669/687 (97%), Gaps = 10/687 (1%)
Strand = Plus / Plus
Query: 1 cagtttcccaatgtgtcccatagcagggttcaaagagcaggcaggcagaggtgagaatgt 60
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtttctaaatgtgtcccatagcagggttcaaagagcaggcaggcagaggtgagaatgt 260
Query: 61 ctgtgatgaaaaactgtccttcttacaaattatgaaagtcctgagtaaacaacactgtga 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgtgatgaaaaactgtcctttttacaaattatgaaagtcctgagtaaacaacactgtga 320
Query: 121 cattttagattttgggggcggagggggggcagcgctcaaagattgtaggtctttctctta 180
|||||||||||||||||| || ||| ||||||| ||||||||||||||||||||||||||
Sbjct: 321 cattttagattttgggggtgg-gggagggcagcactcaaagattgtaggtctttctctta 379
Query: 181 tcagagatctgctcttgggcaaattatttgacctctgtaaccttcagttatctcatctta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tcagagatctgctcttgggcaaattatttgacctctgtaaccttcagttatctcatctta 439
Query: 241 aaattgagcataatgacacctgccctgcctaacccatt----tttttacctgccctacaa 296
|||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 440 aaattgagcataatgacacctgccctgcctaacccattaccat----acctgccctacaa 495
Query: 297 ccccgagttgtaatgagctgaaatgaggcaatgtttgttgacacgcttatggaaagaata 356
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ccc-gagttgtaatgagctgaaatgaggcaatgtttgttgacacgcttatggaaagaata 554
Query: 357 cgcagtataagcagtatataaatgaatccttattactaacactcttgacagtgatcaata 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 cgcagtataagcagtatataaatgaatccttattactaacactcttgacagtgatcaata 614
Query: 417 tagccaaccagttctgatgaaggacttgccaagagtctccagggacaataccccctttcc 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 tagccaaccagttctgatgaaggacttgccaagagtctccagggacaataccccctttcc 674
Query: 477 tttacagaagggccccctaggagcagctctcagctggcagctcatctttcccttcgagga 536
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 675 tttacagaagggccccctaggagcagctctcagctggcagctcatctttccctttgagga 734
Query: 537 taaggacaagtagtcccacacgtgggagggggtgctgtgcacagtaaacacgcgaggtga 596
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 735 taaggacaagtagtcccacacgtgggagggggtgctgtgcacagtaaacacacgaggtga 794
Query: 597 acggggcatgcacatcatgaatacttctcatagaacaagccctccaggcaaggctataag 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 acggggcatgcacatcatgaatacttctcatagaacaagccctccaggcaaggctataag 854
Query: 657 gctaggtatgatcgataatatgcaaga 683
|||||||||||||||||||||||||||
Sbjct: 855 gctaggtatgatcgataatatgcaaga 881
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1082
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1072
Effective search space: 721456
Effective search space used: 721456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
