Query= MSMg01no142_l11.b1 MSMg01no142_l11.b1 CHROMAT_FILE:
MSMg01no142_l11.b1 PHD_FILE: MSMg01no142_l11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:02:45 2005
(270 letters)
>mm_chr18_36333606_36334275
Length = 670
Score = 460 bits (238), Expect = e-134
Identities = 262/270 (97%)
Strand = Plus / Minus
Query: 1 ttttccttttaaaagctctcagatgcccctttaaattcccagccttccactggggggcag 60
||||||||||||||||||||||||||| | ||||||| ||||||| |||||||| |||
Sbjct: 418 ttttccttttaaaagctctcagatgccaatctaaattcagagccttctactgggggccag 359
Query: 61 ctcttacaggttaggtttcccagtgactgtctgggtgtagtctccccattctagatggct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ctcttacaggttaggtttcccagtgactgtctgggtgtagtctccccattctagatggct 299
Query: 121 tgccagtgtccacttgcctgtctcctggtcttctcgctgctgtctaggaaacatagacaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tgccagtgtccacttgcctgtctcctggtcttctcgctgctgtctaggaaacatagacaa 239
Query: 181 agaatttataattaagaatgttaagccgccgggcatggaaagccaccgggcatggtggcc 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 238 agaatttataattaagaatgttaagccgccgggcatggaaagccaccaggcatggtggcc 179
Query: 241 cacgcctttaatcccagcacttgggaggca 270
||||||||||||||||||||||||||||||
Sbjct: 178 cacgcctttaatcccagcacttgggaggca 149
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 670
Length adjustment: 9
Effective length of query: 261
Effective length of database: 661
Effective search space: 172521
Effective search space used: 172521
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no142_l11.g1 MSMg01no142_l11.g1 CHROMAT_FILE:
MSMg01no142_l11.g1 PHD_FILE: MSMg01no142_l11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:02:45 2005
(431 letters)
>mm_chr18_36191175_36192004
Length = 830
Score = 770 bits (398), Expect = 0.0
Identities = 422/438 (96%), Gaps = 15/438 (3%)
Strand = Plus / Plus
Query: 1 gtgtcgtctcctctgcagaggctactggtaagcaccaaggactgagaggagctcaggaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgtcgtctcctctgcagaggctactggtaagcaccaaggactgagaggagctcaggaca 260
Query: 61 cccctgttccctccaagacttgttaagtaagacccccatccctcccactcgaggagactg 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 cccctgttccctccaagacttgttaagtaagacccccttccctcccactcgaggagactg 320
Query: 121 ccagtcaccagggaagaagagaaatagaagaaagaaacatactggagaagttgaccattg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccagtcaccagggaagaagagaaatagaagaaagaaacatactggagaagttgaccattg 380
Query: 181 cgaactgctgacacctgtccccggtgtatcccacaggacacctaccaaaagaaagaaaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgaactgctgacacctgtccccggtgtatcccacaggacacctaccaaaagaaagaaaac 440
Query: 241 cagaaagagagagccaggatagcaagac-------tttttttttgcaacaccccggcgca 293
|||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 441 cagaaagagagagccaggatagcaagacacaggcatt-------gcaacaccccggcgca 493
Query: 294 ggctcctgccagcgccagctaggttcctcaccacggttaccatttgtactggccctgccg 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ggctcctgccagcgccagctaggttcctcaccacggttaccatttgtactggccctgccg 553
Query: 354 ctctgccccttacctgtagccctgaactctaaacccaaggattaggccaaaaaaaatgaa 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 554 ctctgccccttacctgtagccctgaactctaaacccaaggattaggccaaaaaaa-tgaa 612
Query: 414 agaaaaaaaaaatgaaaa 431
||||||||||||||||||
Sbjct: 613 agaaaaaaaaaatgaaaa 630
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 830
Length adjustment: 9
Effective length of query: 422
Effective length of database: 821
Effective search space: 346462
Effective search space used: 346462
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
