Query= MSMg01no142_n23.b1 MSMg01no142_n23.b1 CHROMAT_FILE:
MSMg01no142_n23.b1 PHD_FILE: MSMg01no142_n23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:06 2005
(264 letters)
>mm_chr18_47489324_47489988
Length = 665
Score = 497 bits (257), Expect = e-145
Identities = 263/265 (99%), Gaps = 1/265 (0%)
Strand = Plus / Minus
Query: 1 cggttgactccctccttccagctttatgtgggttccagggcttgaactttggtcagggtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 cggttgactccctccttccagctttatgtgggttccagggcttgaactttggtcagggtc 406
Query: 61 ctgcacagcaagagtgttcacctgctaaactattttactaacttcgaatggttttaaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ctgcacagcaagagtgttcacctgctaaactattttactaacttcgaatggttttaaaag 346
Query: 121 tgatcgatttaaagagtcgagaatgctcgaagtgctacccaataaatgtgctccagggtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tgatcgatttaaagagtcgagaatgctcgaagtgctacccaataaatgtgctccagggtt 286
Query: 181 tattt-aaaaaaaaaaaaaccaacagtcctgtaatagtgtgtacagtgcacacacacaaa 239
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 tatttaaaaaaaaaaaaaaacaacagtcctgtaatagtgtgtacagtgcacacacacaaa 226
Query: 240 gctgagattgggtgtgtttgtgagc 264
|||||||||||||||||||||||||
Sbjct: 225 gctgagattgggtgtgtttgtgagc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 665
Length adjustment: 9
Effective length of query: 255
Effective length of database: 656
Effective search space: 167280
Effective search space used: 167280
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no142_n23.g1 MSMg01no142_n23.g1 CHROMAT_FILE:
MSMg01no142_n23.g1 PHD_FILE: MSMg01no142_n23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:06 2005
(270 letters)
>mm_chr18_47309378_47310047
Length = 670
Score = 482 bits (249), Expect = e-140
Identities = 264/269 (98%)
Strand = Plus / Plus
Query: 1 ttgaatgcttggcacagggcagcaagaagtaaagagagagaagaagcaggctgcgagtgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgaatgcttggcacagggcagcaagaagtaaagagagagaagaagcaggctgcgagtgc 260
Query: 61 ttagagaacagggttggtcgcagcctcgcacagcacccgagctccacgagttttgctgct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttagagaacagggttggtcgcagcctcgcacagcacccgagctccacgagttttgctgct 320
Query: 121 ctggttggttcctgtccagaaacagagccttgaaaggggcccaagggcaggactttgatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctggttggttcctgtccagaaacagagccttgaaaggggcccaagggcaggactttgatg 380
Query: 181 tgtctccaacttattgcaatttccgctttgctctgagtcccgaagtgccccactttctcc 240
||||| ||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 381 tgtctgcaactcattgccatttctgctttgctctgagtcccaaagtgccccactttctcc 440
Query: 241 tatggctatttgcaggtggccagggtgtg 269
|||||||||||||||||||||||||||||
Sbjct: 441 tatggctatttgcaggtggccagggtgtg 469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 670
Length adjustment: 9
Effective length of query: 261
Effective length of database: 661
Effective search space: 172521
Effective search space used: 172521
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
