Query= MSMg01no142_o23.b1 MSMg01no142_o23.b1 CHROMAT_FILE:
MSMg01no142_o23.b1 PHD_FILE: MSMg01no142_o23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:14 2005
(580 letters)
>mm_chr18_47488902_47489882
Length = 981
Score = 1062 bits (549), Expect = 0.0
Identities = 573/581 (98%), Gaps = 1/581 (0%)
Strand = Plus / Minus
Query: 1 cagagaggggtgtgtgtagacctcagaggacaactcagtgcggttgactccctccttcca 60
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 927 cagagaggggtgtgtgtagaggtcagaggacaactcagtgcggttgactccctccttcca 868
Query: 61 gctttatgtgggttccagggcttgaactttggtcagggtcctgcacagcaagagtgttca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 gctttatgtgggttccagggcttgaactttggtcagggtcctgcacagcaagagtgttca 808
Query: 121 cctgctaaactattttactaacttcgaatggttttaaaagtgatcgatttaaagagtcga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 cctgctaaactattttactaacttcgaatggttttaaaagtgatcgatttaaagagtcga 748
Query: 181 gaatgctcgaagtgctacccaataaatgtgctccagggtttattt-aaaaaaaaaaaaac 239
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 747 gaatgctcgaagtgctacccaataaatgtgctccagggtttatttaaaaaaaaaaaaaaa 688
Query: 240 caacagtcctgtaatagtgtgtacagtgcacacacacaaagctgagattgggtgtgtttg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 caacagtcctgtaatagtgtgtacagtgcacacacacaaagctgagattgggtgtgtttg 628
Query: 300 tgagcagttggcatatgctgtggaggaacctgatcctgggtgtcataaattatgaagtgt 359
||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 627 tgagcagttggcagaggctgtggaggaacctgatcctgggtgtcgtaaattatgaagtgt 568
Query: 360 ttacacctgtcaactctgtctgtgtccctgctaatgatactttaacaactggccagggtg 419
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 567 ttacacctgtcaactctgtctgtgtccctgctaatgataccttaacaactggccagggtg 508
Query: 420 acacaacacaaagggtcattccttttgagctctgtgatgtgggtgaggaccttgccaccg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 acacaacacaaagggtcattccttttgagctctgtgatgtgggtgaggaccttgccaccg 448
Query: 480 ggttctggtggttttagaaaggtggcttggcccttagagatgcactcacaggtcattggg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ggttctggtggttttagaaaggtggcttggcccttagagatgcactcacaggtcattggg 388
Query: 540 gaggtcctcacacaagggcctttgaactgggcacgggttaa 580
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gaggtcctcacacaagggcctttgaactgggcacgggttaa 347
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 981
Length adjustment: 10
Effective length of query: 570
Effective length of database: 971
Effective search space: 553470
Effective search space used: 553470
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no142_o23.g1 MSMg01no142_o23.g1 CHROMAT_FILE:
MSMg01no142_o23.g1 PHD_FILE: MSMg01no142_o23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:15 2005
(623 letters)
>mm_chr18_47309380_47310402
Length = 1023
Score = 1151 bits (595), Expect = 0.0
Identities = 616/623 (98%)
Strand = Plus / Plus
Query: 1 gaatgcttggcacagggcagcaagaagtaaagagagagaagaagcaggctgcgagtgctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaatgcttggcacagggcagcaagaagtaaagagagagaagaagcaggctgcgagtgctt 260
Query: 61 agagaacagggttggtcgcagcctcgcacagcacccgagctccacgagttttgctgctct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagaacagggttggtcgcagcctcgcacagcacccgagctccacgagttttgctgctct 320
Query: 121 ggttggttcctgtccagaaacagagccttgaaaggggcccaagggcaggactttgatgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggttggttcctgtccagaaacagagccttgaaaggggcccaagggcaggactttgatgtg 380
Query: 181 tctgcaacttattgcaatttctgctttgctctgagtcccgaagtgccccactttctccta 240
||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 tctgcaactcattgccatttctgctttgctctgagtcccaaagtgccccactttctccta 440
Query: 241 tggctatttgcaggtggccagggtgtggacagcatagaagccaaggacagaaaagaccac 300
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 tggctatttgcaggtggccagggtgtggacagcagagaagccaaggacagaaaagaccac 500
Query: 301 ctgcagctgctctgttgcccacctaatttggacgcagcctttaatcctgcaacaagaact 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgcagctgctctgttgcccacctaatttggacgcagcctttaatcctgcaacaagaact 560
Query: 361 ctggctccagacactggtttagttccaagataccaaacagaagtaaaagtgaagtagaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctggctccagacactggtttagttccaagataccaaacagaagtaaaagtgaagtagaac 620
Query: 421 ctacttggaatccatttctggctggggctcaggctagctcagcctaaggaactctctctg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctacttggaatccatttctggctggggctcaggctagctcagcctaaggaactctctctg 680
Query: 481 cctccttgtctttctggctttctgtgcctctggcattgagaggtcaccagagcatgcttc 540
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 681 cctacttgtctttctggctttctgtgcctctggcattgaaaggtcaccagagcatgcttc 740
Query: 541 ctcctctccaagacagaaatggtttggatttcagatctcagctcctgaaagctgttgtgt 600
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctcctccccaagacagaaatggtttggatttcagatctcagctcctgaaagctgttgtgt 800
Query: 601 catcttctaagggcctgttgttg 623
|||||||||||||||||||||||
Sbjct: 801 catcttctaagggcctgttgttg 823
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space: 620969
Effective search space used: 620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
