Query= MSMg01no144_b20.b1 MSMg01no144_b20.b1 CHROMAT_FILE:
MSMg01no144_b20.b1 PHD_FILE: MSMg01no144_b20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:51 2005
(667 letters)
>mm_chr18_8335067_8336133
Length = 1067
Score = 1226 bits (634), Expect = 0.0
Identities = 658/666 (98%)
Strand = Plus / Plus
Query: 1 tgataaaaagcaaaagcacaaggtcaaagacagaaggagaaacacagctctggcctcctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgataaaaagcaaaagcacaaggtcaaagacagaaggagaaacacagctctggcctcctg 260
Query: 61 accagccccttaaggtgagaaaagtgagctctagttatcctgagttggaagctcttgtgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accagccccttaaggtgagaaaagtgagctctagttatcctgagttggaagctcttgtgt 320
Query: 121 attggaaataaacatcacccaccaagtcacttcatttgctcacttgatttctgtttgggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attggaaataaacatcacccaccaagtcacttcatttgctcacttgatttctgtttgggt 380
Query: 181 ttcttttttgaacttcgattgtagtgtgtctgtcattttctttctctgattagcctttga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcttttttgaacttcgattgtagtgtgtctgtcattttctttctctgattagcctttga 440
Query: 241 gaaatctgtagagaaaactcctttaaggaaaatcccgaaattgatctattataaaatctg 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaatttgtagagaaaactcctttaaggaaaatcccgaaattgatctattataaaatctg 500
Query: 301 aaattaaaaattttgtttaagaatatcctttaaatagatatatgtaacctttcacacagt 360
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 aaattaaaatttttgtttaagaatatcctttaaatagatatatgtaagctttcacacagt 560
Query: 361 ccaatttcatgaaggagagctatgataaatcagcatttcagatgccatgggttagtgtca 420
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 561 ccaatttcatgaaggagagctatgataaatcagcatttcagatgccatgggtcagtatca 620
Query: 421 gttcatgaaatttttctgtcaccctcctactgtcactatgtaggctctatagtgatctat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gttcatgaaatttttctgtcaccctcctactgtcactatgtaggctctatagtgatctat 680
Query: 481 gaacttcctacagggagagctacagctgagctcatgtttgtatttgtcagtgtctgcttt 540
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 681 gaacttcctacagggagagctacagctgagctcatgtttgtatttgccagtgtctgcttt 740
Query: 541 tcatgtgcaccaagtccctagctttacagtgctctgaactcttcattctctccttggagt 600
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 741 tcacgtgcaccaagtccctagctttacagtgctctgaacttttcattctctccttggagt 800
Query: 601 ttgcagacatgatgatttgcctcaggagaagagttgtttcctgaccacatatccattatg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttgcagacatgatgatttgcctcaggagaagagttgtttcctgaccacatatccattatg 860
Query: 661 ggtatg 666
||||||
Sbjct: 861 ggtatg 866
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space: 694449
Effective search space used: 694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no144_b20.g1 MSMg01no144_b20.g1 CHROMAT_FILE:
MSMg01no144_b20.g1 PHD_FILE: MSMg01no144_b20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:51 2005
(344 letters)
>mm_chr18_8477522_8478262
Length = 741
Score = 584 bits (302), Expect = e-171
Identities = 332/346 (95%), Gaps = 8/346 (2%)
Strand = Plus / Minus
Query: 1 cgattctcagaacccaccaaatgcctaatgagtgtggcagcctcctgtaatccaaacatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 cgattctcagaacccaccaaatgcctaatgagtgtggcagcctcctgtaatccaaacatc 328
Query: 61 agatgacagagatgaggggtccccagagcaaacaggtttgtgagtctaatcattgtgttt 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 agatgatagagatgaggggtccccagagcaaacaggtttgtgagtctaatcattgtgttt 268
Query: 121 cactaggagaccttctctcaatgaatacagcagaaaatcagtggagaatgactcgaacaa 180
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 267 cactaggagac---ctctcaatgaatacagcagaaaatcagtggagaatgcctcgaacaa 211
Query: 181 cttttggcttacatacacacatgtacccgtgcacatatgcacacct-----acacacaca 235
||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||
Sbjct: 210 cttttggcttacatacacacatgtacctgtgcacatgtgcacacctcctacacacacaca 151
Query: 236 cacacacacacacatttattgtgaacaagaatttctttatagaaacctctacagtggttg 295
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 150 cacacacacacacatttactgtgaacaagaatttctttatagaaacctctacagcggttg 91
Query: 296 attgaccaattaaaatgtcagtgactgtggagagtttgaaatgttg 341
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90 attgaccaattaaaatgtcagtgactgtggagagtttgaaatgttg 45
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 741
Length adjustment: 9
Effective length of query: 335
Effective length of database: 732
Effective search space: 245220
Effective search space used: 245220
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
