Query= MSMg01no144_i15.b1 MSMg01no144_i15.b1 CHROMAT_FILE:
MSMg01no144_i15.b1 PHD_FILE: MSMg01no144_i15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:24 2005
(519 letters)
>mm_chr18_58669032_58669958
Length = 927
Score = 756 bits (391), Expect = 0.0
Identities = 498/559 (89%), Gaps = 45/559 (8%)
Strand = Plus / Minus
Query: 6 aattcataatgctgatcgccaatgctgaatctgagcaaagatttaggatgccttagcaat 65
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 927 aattcataatgctgatagccaatgctgaatctgagcaaagatttaggatgccttagcaat 868
Query: 66 ctcacatcaatttgtttagtttaggagtccgcatctcggagaagccacacgggatttgta 125
||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 867 ctcacatcaatttgtttagtttaggagtccgcatctcagagaagccacacaagatttgta 808
Query: 126 tgaagctatt---ttattgatttaaaaaggagca------------------------gt 158
|||||||||| ||||||||||||||||||||| ||
Sbjct: 807 tgaagctattttcttattgatttaaaaaggagcaatttggggttttgttgttgttgttgt 748
Query: 159 --ttg-----gtttt---tcttttgttttg--ttgttttaaatcagatagcttaatttgt 206
||| ||||| | |||||||||| ||||||||||||||||||||||||||||
Sbjct: 747 tgttgtttatgtttttgattttttgttttgttttgttttaaatcagatagcttaatttgt 688
Query: 207 gaaagaacaaacttgatattatggagtgaaaaatatattttactcttggatttagaaaca 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 gaaagaacaaacttgatattatggagtgaaaaatatattttactcttggatttagaaaca 628
Query: 267 actgctaacctctttcacact------gaaagtttagcctttgaatcgctcatttttatg 320
| |||| ||||||||||| || |||||||||||||||||||| ||||||||||||
Sbjct: 627 attgcttacctctttcacgctagatacgaaagtttagcctttgaatcactcatttttatg 568
Query: 321 tttctaattcaaaggaaaggcgactccatgaataagcctccttgcttgtgctgccaccta 380
|||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 567 tttcgaattcaaaggaaaggcgactgcatgaataagtctccttgcttgtgctgccaccta 508
Query: 381 gtggcccggatggaaaatgttagctagcaatgccggttctcttagttaggcaaatgtttt 440
||||||| ||||||||||||||||||| |||||||||||| |||| ||||||||||||||
Sbjct: 507 gtggcccagatggaaaatgttagctagtaatgccggttcttttaggtaggcaaatgtttt 448
Query: 441 gtcttgagacagaaaagctcatttcataattaactgaacgttaagatcgatgtctttaaa 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gtcttgagacagaaaagctcatttcataattaactgaacgttaagatcgatgtctttaaa 388
Query: 501 tgcaagtactattgtataa 519
|||||||||||||||||||
Sbjct: 387 tgcaagtactattgtataa 369
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 927
Length adjustment: 10
Effective length of query: 509
Effective length of database: 917
Effective search space: 466753
Effective search space used: 466753
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no144_i15.g1 MSMg01no144_i15.g1 CHROMAT_FILE:
MSMg01no144_i15.g1 PHD_FILE: MSMg01no144_i15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:24 2005
(661 letters)
>mm_chr18_58560367_58561429
Length = 1063
Score = 1220 bits (631), Expect = 0.0
Identities = 655/663 (98%), Gaps = 2/663 (0%)
Strand = Plus / Plus
Query: 1 taggcatttcacaaggtcaaggtcataggcagagctttactcttgattcaactccagatg 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 taggcatttcacaaggtcaaggtcataggcagagctttactcttgatacaactccagatg 260
Query: 61 tgtagaagtgagggcagaaaatccactcagtagtgttctcctttacagcttctcctgcat 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 tgtagaagtgagggcagaaaatccactcagtagtgttctcctttacagcttcccctgcat 320
Query: 121 gggatgatggacaagtcatgccgggggcagagtagaaaacgagagaacaatataatgggt 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 gggatgatggacaagtcatgccgggggcagaatagaaaacgagagaacaatataatgggt 380
Query: 181 gtgcagcccagacaggcaccccatcgtctgtaagcatgcatcaagcaacacatttgaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgcagcccagacaggcaccccatcgtctgtaagcatgcatcaagcaacacatttgaaaa 440
Query: 241 cttggggaaaccagttttctgtgatatgcatgagccccagtgaacagtcgtgtcatattc 300
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 cttggggaaaccagttttctgtgatatgcatgagccccagtgaacagtagtgtcatattc 500
Query: 301 atttgaaatcagcccatatatgggcagagagcttgctggctgaacagattctgctttttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atttgaaatcagcccatatatgggcagagagcttgctggctgaacagattctgctttttg 560
Query: 361 aacttaagttccacgactgtcacatctcccatgggctataagacaaagtacactgctgtg 420
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aacttaagttccatgactgtcacatctcccatgggctataagacaaagtacactgctgtg 620
Query: 421 tctttgcgtaaaattatgcttaatcacgttcagatggtttagagctataaaaaa-gccag 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 621 tctttgcgtaaaattatgcttaatcacgttcagatggtttagagctataaaaaaagccag 680
Query: 480 gaatgtaac-gggcataaagataagtctacaaaatcaatgctatattttatgttgtactc 538
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaatgtaactgggcataaagataagtctacaaaatcaatgctatattttatgttgtactc 740
Query: 539 tctaaaaataaaataatatacaagtctcagtggacactagaatgggatatttggagtatt 598
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 741 tctaaaaataaaataatatacaagtctcagtggaaactagaatgggatatttggagtatt 800
Query: 599 tggatatccactggtttcaagttcttgagggtctaccaaccccccttctacagagtggca 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tggatatccactggtttcaagttcttgagggtctaccaaccccccttctacagagtggca 860
Query: 659 tat 661
|||
Sbjct: 861 tat 863
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1063
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1053
Effective search space: 685503
Effective search space used: 685503
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
