Query= MSMg01no146_c04.b1 MSMg01no146_c04.b1 CHROMAT_FILE:
MSMg01no146_c04.b1 PHD_FILE: MSMg01no146_c04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:33 2005
(789 letters)
>mm_chr18_29026472_29027660
Length = 1189
Score = 1435 bits (742), Expect = 0.0
Identities = 766/774 (98%)
Strand = Plus / Plus
Query: 16 ggaattctctagaggagttataaccttttaaaaggacataattttgtatcagtaaggaaa 75
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 216 ggaattctctagaggagttataaactactaaaaggacataattttgtatcagtaaggaaa 275
Query: 76 attgctcattcagttttggaagtccgcgtaggaaatcacaatagtatactatgaaataag 135
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 276 attgctcattcagttttggaagtctgtgtaggaaatcacaatagtatactatgaaataag 335
Query: 136 gtaaaatacaaataatagcaggagtacattaaatatatgcacaataaatgcgtgggaatc 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gtaaaatacaaataatagcaggagtacattaaatatatgcacaataaatgcgtgggaatc 395
Query: 196 gagagtatctgctggtttacatattttgaaaaagccacactgactttgtgttctgcttgg 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gagagtatctgctggtttacatattttgaaaaagccacactgactttgtgttctgcttgg 455
Query: 256 taaaaaatactctctggttttttaataaaatctttccccggtgcagtcacctcagattgt 315
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 456 taaaaaatactctctggttttttaataaaatctttcccaggtgcagtcacctcagattgt 515
Query: 316 aatggacttgcaggatgcaggagccaagactctgtcttcatatttaagtctagcctcaaa 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 aatggacttgcaggatgcaggagccaagactctgtcttcatatttaagtctagcctcaaa 575
Query: 376 ctcacactctgaactgttcgtgattcctttgaaatctggcatttccattctacaaccaag 435
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 576 ctcacactctgaactgttcgtgattcctttgaaatatggcatttccattctacaaccaag 635
Query: 436 cttggaaatgtatatccagacagatagctgcttaaagaggcattgacaagagtggtttgt 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 cttggaaatgtatatccagacagatagctgcttaaagaggcattgacaagagtggtttgt 695
Query: 496 aaataaaaaaaatcctccatcatggttaatcttgtaatattcattttctttgatatttta 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 aaataaaaaaaatcctccatcatggttaatcttgtaatattcattttctttgatatttta 755
Query: 556 tacctgagaaagaaggaaggaaagacaaagactgtggttgtcctttgagctatgttgacc 615
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 756 tacctgagaaagaaggaaggaaagacaaagaatgtggttgtcctttgagctatgttgacc 815
Query: 616 attttcttcccttcagtactaatttatttcaactgaaaagttcccagctgtgttgacaaa 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 attttcttcccttcagtactaatttatttcaactgaaaagttcccagctgtgttgacaaa 875
Query: 676 gaaatagtctgagaaaaaagccttacatctgctcctgtagagtggttcccatcaagctac 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 gaaatagtctgagaaaaaagccttacatctgctcctgtagagtggttcccatcaagctac 935
Query: 736 tgagtcacagctgccacagctgccaagtacttgttctcctgtgaacttcaagac 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936 tgagtcacagctgccacagctgccaagtacttgttctcctgtgaacttcaagac 989
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 789
Length of database: 1189
Length adjustment: 10
Effective length of query: 779
Effective length of database: 1179
Effective search space: 918441
Effective search space used: 918441
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no146_c04.g1 MSMg01no146_c04.g1 CHROMAT_FILE:
MSMg01no146_c04.g1 PHD_FILE: MSMg01no146_c04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:33 2005
(294 letters)
>mm_chr18_29093215_29093909
Length = 695
Score = 327 bits (169), Expect = 5e-94
Identities = 277/350 (79%), Gaps = 61/350 (17%)
Strand = Plus / Minus
Query: 1 tgttttgataggcataaaatgaaagactccgtacttatctctagaggaccccttggtgtt 60
|||||||||||||||| |||||||||||| || |||||| |||||||| ||||||||||
Sbjct: 677 tgttttgataggcatataatgaaagactctgttcttatcactagaggattccttggtgtt 618
Query: 61 cttctgagtcataaaatgtgaactgaaagttgtagacttagattttctcctaaacctgct 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 cttctaagtcataaaatgtgaactgaaagttgtagacttagattttctcctaaacctgct 558
Query: 121 ttatttaag--------------------------------------------------- 129
|||||||||
Sbjct: 557 ttatttaaggtactttttttctttttctttctttctttctttctttctttctttcttttt 498
Query: 130 -----tttttttttt-aagctcacagtattttatttcatggaggttacattttgatagga 183
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tttttttttttttttgaggctcacagtattttatttcatggaggttacattttgatagga 438
Query: 184 aaacagacaacacaaccatcttacaataagtatgtggagaaaaataa-agcacaaaagaa 242
|||||| ||||| |||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 437 aaacaggcaacaaaaccatcttacaataagtatgtggagaaaaataaca-cacaaaagaa 379
Query: 243 atatagt-atgggagggtgtgtatgtgtttgtatgtgancatgtgtgtgt 291
||||||| | |||||||||||| ||||||||||||||| |||||||||||
Sbjct: 378 atatagtga-gggagggtgtgtgtgtgtttgtatgtgagcatgtgtgtgt 330
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 695
Length adjustment: 9
Effective length of query: 285
Effective length of database: 686
Effective search space: 195510
Effective search space used: 195510
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
