Query= MSMg01no148_h03.b1 MSMg01no148_h03.b1 CHROMAT_FILE:
MSMg01no148_h03.b1 PHD_FILE: MSMg01no148_h03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:21 2005
(287 letters)
>mm_chr18_75580969_75581656
Length = 688
Score = 507 bits (262), Expect = e-148
Identities = 282/289 (97%), Gaps = 3/289 (1%)
Strand = Plus / Plus
Query: 1 gttttaaggtttgggtggctgtcacacagcagagggctctttgccagccctctcagtagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gttttaaggtttgggtggctgtcacacagcagagggctctttgccagccctctcagtagc 260
Query: 61 tgctgacaggaacgccatcctatcagcgagtggcatatttgttgaggctcctgcttctga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgctgacaggaacgccatcctatcagcgagtggcatatttgttgaggctcctgcttctga 320
Query: 121 gagagaccaccaagctaagcctggtgacaggtgaacatgtgagaattctcaagctccact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagagaccaccaagctaagcctggtgacaggtgaacatgtgagaattctcaagctccact 380
Query: 181 ccaccactttgatatgatgggtgacaaaggagccacatgtccctccaaaaaggtagatgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 ccaccactttgatatgatgggtgacaaaggagccacatgtccctccaaaaaggtagacat 440
Query: 241 tgtgtggctan-tt-tccttcacggcctgcctgggttactgtaggagaa 287
|||| ||| | || ||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtggggc-acattctccttcacggcctgcctgggttactgtaggagaa 488
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 688
Length adjustment: 9
Effective length of query: 278
Effective length of database: 679
Effective search space: 188762
Effective search space used: 188762
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no148_h03.g1 MSMg01no148_h03.g1 CHROMAT_FILE:
MSMg01no148_h03.g1 PHD_FILE: MSMg01no148_h03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:21 2005
(601 letters)
>mm_chr18_75649584_75650580
Length = 997
Score = 1104 bits (571), Expect = 0.0
Identities = 592/601 (98%), Gaps = 4/601 (0%)
Strand = Plus / Minus
Query: 1 catgtgaggtagtatttcagacttttaagagaaaccctaatttttgtgtgtgtaagagtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 catgtgaggtagtatttcagacttttaagagaaaccctaatttttgtgtgtgtaagagtt 738
Query: 61 gaatgtttgtaggaaatggaaatccacacacaccccccccaacatgagctcgagccccat 120
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 737 gaatgtttgtaggaaatggaaatc----cacaccccccccaacatgagctcgagccccat 682
Query: 121 cttggaaaggccaagccatctggtgtccatagccctccatcaggtatcatggtacctatg 180
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 681 cttggaaaggccaagccatctggtgtccgtagccctccatcaggtatcatggtacctatg 622
Query: 181 gtataagtcatcggtactgtagattgtcaggaaaacaaccatgacagactagtgtcaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtataagtcatcggtactgtagattgtcaggaaaacaaccatgacagactagtgtcaaaa 562
Query: 241 aaggcaaaatatttcatatctaaaatatgattttagatcaacaggagtctgtggaagagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaggcaaaatatttcatatctaaaatatgattttagatcaacaggagtctgtggaagagg 502
Query: 301 aagttggctgagaccattacagcagaaagctaatctgcatgaacagaaggcagaggccac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagttggctgagaccattacagcagaaagctaatctgcatgaacagaaggcagaggccac 442
Query: 361 ctgactatctgatggcacctaatatctatgcccagacactccaatgtgtgtacctcatag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgactatctgatggcacctaatatctatgcccagacactccaatgtgtgtacctcatag 382
Query: 421 ccacccaagccatccctggggaaaactcagagcagacgccaattcacactctcagtttct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccacccaagccatccctggggaaaactcagagcagacgccaattcacactctcagtttct 322
Query: 481 agaataggcgatagtactccctgaaagccccaaggttgtggatatataaggggtcttggg 540
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 ggaataggcgatagtactccctgaaagccccaagattgtggatatataaggggtcttggg 262
Query: 541 agctagtggttttatcttagtgagaagtgtggcttagggtcctgcgtgacagcttgcatc 600
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 261 agctagtggttttatcttagtgagaagtgtggcttagggtcctgcatgacagtttgcatc 202
Query: 601 a 601
|
Sbjct: 201 a 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 997
Length adjustment: 10
Effective length of query: 591
Effective length of database: 987
Effective search space: 583317
Effective search space used: 583317
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
