BAC Information

Click to search

BAC

Clone NameMSMg01-148I23
Chromosome18 (Build37)
Map Location 40,467,676 - 40,467,919
singlet/doubletsinglet
Overlap geneKctd16
Upstream geneArhgap26, Nr3c1, Pabpc2, LOC100041939, Yipf5
Downstream geneEG225416
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148I23.T7 (MSMg01no148_i23.b1)MSMg01-148I23.TJ (MSMg01no148_i23.g1)
ACCAG351518AG351519
length688736
length of high quality
(start - end)		422 (39 - 460)517 (67 - 583)
definitionCHROMAT_FILE: MSMg01no148_i23.b1 PHD_FILE: MSMg01no148_i23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:30 2005CHROMAT_FILE: MSMg01no148_i23.g1 PHD_FILE: MSMg01no148_i23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:30 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAC
AGGGAAATCACCACTCAGGGACTTCAGGCAGAAAACTAGCCAGTCAGCCT
CTGGATAGACAAGGCTCAACAGTTCAGAGAACCAGGCCATCGCAAATAGT
TCACAGACCTGCAAGGAAGACATGCAGATCCCTGCCCCCCACCCTACCCC
TCCCCCAGCCCCACCCAAACATAGGGAGAAAAGGCAGTGTGGGGGAGGGG
GAGGTGCTGTGAGAGAATTTAGATAGCTCGAAGAAATAAATAGCTGGAGA
CTTCATTCATTTACTTATTTTATTGAGTATATGGTGAAAGAGGGAAAATG
GCTCGAAAAGGAGGGAGGGCAGACTGTCTTCCCATGCTGGGATCATTCAT
GCCTTAAGAAGGAACGCACGAGGGTGGAGAGATGGCTCAGCGGTTTAGAG
CCCTGACTGCTCTTCTGAAGAACCTGGAGGTCAAATCCCCGGGAACCCAA
AATGGGGGGGGTGGGGTTTTATAAATATTTTTTTCTACCTTTTCCTTTTC
TCCGTTTTTCCTCCCCCTCTCCTTTTTTTTGTGTTTGCTCTCCCTCCCCC
TTACTTTTCTCCCACTTTTGGCCCGATTTTTCTTCTCCCCCCACTTCTTG
CTATCCATCACTTTTTTTTTTCCCTCTTTTACCGCCTC

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCTGAACTCACTGTCCTTTCAGGTCCACATTTGC
TCTGGCTCTGGCAACTGACTGAACCAAACAATTAGGCTCATACCTAGAAC
TTTGGAAATGGTAATGGAGTTGATAACACACCCTAACAGAAAGAGGAATG
CTCCACTCACTAGTACACTTTCACTAGAAGCCTCACCCTGTCAGCAGTTT
AGGAATTTGTAAAGCCAATCTGGACAATATTTAAATGGTTTGGAATTTCT
ACTTCATGTTTTTTTTTTTTTTTTAGAGACAGGGTTTCTCTGTATAGCCC
TGGCTGTCCTGGCACATTGGATTTTATAACAGACTTTGTGTGTGTGTGTG
TGTGTGTGTGTGCGTGTGTGTAATACTTCTCCTGTGATTGCCGTAACTTG
CAATCTAGTGGGCTTATGTTTGATTCCTGTAATCTTTTTTTCTAATTCTT
TTTCCTTTTTATATTTTATTTTATTTTATTTTATTTTATTTTATTTTATT
TTATTTTATTTTATTTTATTTTATTTTATTTCACTTTCCCCTTTTTCTCC
CCTTTTTTTTCCCTTTTCCCTTTTCCTCTTCTCCCTCCTCTTTTTCCCTT
CCCCCTCCCCTTTCTTTTTCCTCTTTCTCTCTCTTCCTTTTTTTTTTTTC
CCCCCCTCCTTTTCTCTTTTCCATTCCTTTTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_i23.g1 MSMg01no148_i23.g1 CHROMAT_FILE:
MSMg01no148_i23.g1 PHD_FILE: MSMg01no148_i23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:30 2005
         (517 letters)



>mm_chr18_40467476_40468391
          Length = 916

 Score =  366 bits (189), Expect = e-105
 Identities = 231/245 (94%), Gaps = 1/245 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgaactcactgtcctttcaggtccacatttgctctggctctggcaactgactgaacca 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 444 tctgaactcactgtcctttcaggtccacctttgctctggctctggcaactgactgaacca 385

                                                                       
Query: 61  aacaattaggctcatacctagaactttggaaatggtaatggagttgataacacaccctaa 120
           ||||| |||||||||||||||| ||| | |||||||||||||||||| ||||||| ||||
Sbjct: 384 aacaa-taggctcatacctagatcttcgaaaatggtaatggagttgaaaacacactctaa 326

                                                                       
Query: 121 cagaaagaggaatgctccactcactagtacactttcactagaagcctcaccctgtcagca 180
           |||||||||||| |||||||||||||| | |||||||||||||||||| ||||| |||||
Sbjct: 325 cagaaagaggaaggctccactcactagaagactttcactagaagcctcgccctgccagca 266

                                                                       
Query: 181 gtttaggaatttgtaaagccaatctggacaatatttaaatggtttggaatttctacttca 240
           ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 265 gtttaggaatttgtaaagccaatctggacaatatttacatgatttggaatttctacttca 206

                
Query: 241 tgttt 245
           |||||
Sbjct: 205 tgttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 916
Length adjustment: 10
Effective length of query: 507
Effective length of database: 906
Effective search space:   459342
Effective search space used:   459342
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |