Query= MSMg01no148_n07.b1 MSMg01no148_n07.b1 CHROMAT_FILE:
MSMg01no148_n07.b1 PHD_FILE: MSMg01no148_n07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:51 2005
(667 letters)
>mm_chr18_33006355_33007424
Length = 1070
Score = 1170 bits (605), Expect = 0.0
Identities = 649/669 (97%), Gaps = 10/669 (1%)
Strand = Plus / Minus
Query: 6 aattcctagctcttactgttgatgcaaaattaatgctagaaagcagaaactcacttgcac 65
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1063 aattcctagctcttaatgttgatgcaaaattaatgctagaaagcagaaactcacttgcac 1004
Query: 66 ttaaaatctgctgtccattttgtccataatatctaatcttggtaagagaagcactatgcc 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1003 ttaaaatctgctgtccattttgtccataatatctaatcttggtaagagaagcactatgcc 944
Query: 126 ccattctgaatctcaacagccgtccttcacccgcggggccatcaaagatccatatctaca 185
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 943 ccattctgaatctcaacaaccgtccttcacccgcggggccgtcaaagatccatatctaca 884
Query: 186 agaaagtac-------aattgcttcaaccatgtgccatctgcaggtacctgagtcaccct 238
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 883 agaaaatacagtggtgaattgcttcaaccatgtgccatctgcaggtacctgagtcaccct 824
Query: 239 cctcaacacattagcagtgctgcattgaaggctaagctgtaactcttagccacttcaagg 298
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 823 cctcaacacattagcagtgctgcattgaaggctaagctgtaactcttagccacttcgagg 764
Query: 299 cagtcatgtaccctgc---taagcttctgtttcctgtataccaatctcatcccacactcc 355
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 cagtcatgtaccctgctaataagcttctgtttcctgtataccaatctcatcccacactcc 704
Query: 356 ctcagtcattcatccaacgccgagctaccaaaacaaactccaataggccacatgcactta 415
||||||||| || |||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 703 ctcagtcatacagccaagggtgagctaccaaaacaaactccaataggccacatgcactta 644
Query: 416 gaggaggacagcaataatcacaataccctaagagcattatcagcgccatttgtaacaagc 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 gaggaggacagcaataatcacaataccctaagagcattatcagcgccatttgtaacaagc 584
Query: 476 aacggctctctatggagaaatgtcagcccagatattgctgtagagtgtgcatttctcatt 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 aacggctctctatggagaaatgtcagcccagatattgctgtagagtgtgcatttctcatt 524
Query: 536 tgattaattaattttttgtcttccagatcccagagtccaatatggccacacgggcttcca 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 tgattaattaattttttgtcttccagatcccagagtccaatatggccacacgggcttcca 464
Query: 596 gctgccattattggatgaccatctgttaataaaacaaaaacattaacaaaaacatctcaa 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 gctgccattattggatgaccatctgttaataaaacaaaaacattaacaaaaacatctcaa 404
Query: 656 gacactgcc 664
|||||||||
Sbjct: 403 gacactgcc 395
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1070
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1060
Effective search space: 696420
Effective search space used: 696420
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no148_n07.g1 MSMg01no148_n07.g1 CHROMAT_FILE:
MSMg01no148_n07.g1 PHD_FILE: MSMg01no148_n07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:51 2005
(488 letters)
>mm_chr18_32858602_32859487
Length = 886
Score = 793 bits (410), Expect = 0.0
Identities = 467/496 (94%), Gaps = 21/496 (4%)
Strand = Plus / Plus
Query: 1 tataaaagaatggggtgtgtcagggaagtctataactataaaagtgattagagcgggcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tataaaagaatggggtgtgtcagggaagtctataactataaaagtgattagagcgggcct 260
Query: 61 cattaaggcacagataacatcagaacagagctttcaaaggcataatcatatgacac-aag 119
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 261 cattaaggcacagataacatcagaac--agctttcaaaggcataatcatatgacacgaag 318
Query: 120 catttgtaatagaaggaatggcaagttctaggactctgagactaatggatgtctggcagg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 catttgtaatagaaggaatggcaagttctaggactctgagactaatggatgtctggcagg 378
Query: 180 tttgagacctagcaagaaagacaagggtggctggagtaccaactccacctccacctcctc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tttgagacctagcaagaaagacaagggtggctggagtaccaactccacctccacctcctc 438
Query: 240 cacctcctccaccacctccacctcctccacctcctccaccacctcca------cca---c 290
|||||||||||||||||||||| |||||||| ||||||||||||||| ||| |
Sbjct: 439 cacctcctccaccacctccaccacctccaccacctccaccacctccacctcctccacctc 498
Query: 291 ctccaccacctccaccacctccacctcctccacctcctccacctcctccaccacctccac 350
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ctccacctcctccaccacctccacctcctccacctcctccacctcctccaccacctccac 558
Query: 351 ctcctccaccacctccacctcctccacctcctccacctcctccaccacctccacctcctc 410
| ||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||
Sbjct: 559 cacctccaccacctccacctcctcctccacctccaccacctccaccacctccacctcctc 618
Query: 411 cacctcctccacc---tcctccacctcc------tccaccacctccaccacctccacctc 461
||||||||||||| |||||||||||| |||||||||||||||||||||||| |
Sbjct: 619 cacctcctccaccacctcctccacctccaccacctccaccacctccaccacctccaccac 678
Query: 462 ctccacctcctccacc 477
||||||||||||||||
Sbjct: 679 ctccacctcctccacc 694
Score = 337 bits (174), Expect = 1e-96
Identities = 219/242 (90%), Gaps = 15/242 (6%)
Strand = Plus / Plus
Query: 224 ccacctccacctcctccacctcctccaccacctccacctcctccacctcc------tcca 277
||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 648 ccacctccaccacctccaccacctccaccacctccacctcctccacctccaccacttcca 707
Query: 278 ccacctccaccacctccaccacctccaccacctccacctcctccacctcctccacctcct 337
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 708 ccacctccacctcctccaccacctccaccacctccaccacctccacctcctccacctcct 767
Query: 338 ccaccacctccacctcctccaccacctccacctcctccacctcctccacctcctccacca 397
||||| ||||||||||||||||||||| || |||||||| |||||||| |||||||||
Sbjct: 768 ccacc---tccacctcctccaccacctcctccacctccaccacctccaccacctccacca 824
Query: 398 cctccacctcctccacctcc------tccacctcctccacctcctccaccacctccacca 451
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 825 cctccacctcctccacctccaccacctccacctcctccacctcctccaccacctccacca 884
Query: 452 cc 453
||
Sbjct: 885 cc 886
Score = 236 bits (122), Expect = 3e-66
Identities = 167/186 (89%), Gaps = 9/186 (4%)
Strand = Plus / Plus
Query: 217 accaactcca---cctccacctcctccacctcctccaccacctccacctcctccacctcc 273
|||| ||||| |||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 707 accacctccacctcctccaccacctccaccacctccaccacctccacctcctccacctcc 766
Query: 274 tccaccacctccaccacctccaccacctccaccacctccacctcctccacctcctccacc 333
|||||| |||||| |||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct: 767 tccacc---tccacctcctccaccacctcctccacctccaccacctccaccacctccacc 823
Query: 334 tcctccaccacctccacctcctccaccacctccacctcctccacctcctccacctcctcc 393
|||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 824 acctccacctcctccacctcc---accacctccacctcctccacctcctccaccacctcc 880
Query: 394 accacc 399
||||||
Sbjct: 881 accacc 886
Score = 70.3 bits (36), Expect = 3e-16
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 449 ccacctccacctcctccacctcctccaccacctcctccac 488
||||||||||||||||||||||||||||||||||| ||||
Sbjct: 423 ccacctccacctcctccacctcctccaccacctccaccac 462
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 329
Number of extensions: 62
Number of successful extensions: 62
Number of sequences better than 10.0: 1
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 12
Length of query: 488
Length of database: 886
Length adjustment: 10
Effective length of query: 478
Effective length of database: 876
Effective search space: 418728
Effective search space used: 418728
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
